# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 1.59e-11 2j41A 207 1.71e-11 1znwA 207 3.09e-11 c.37.1.1 125412 1z6gA 218 3.48e-11 1p5zB 263 1.05e-10 c.37.1.1 87815 2ccjA 205 1.14e-10 2pbrA 195 1.48e-10 1z8fA 228 1.55e-10 4tmkA 213 1.73e-10 c.37.1.1 31930 1kjwA 295 3.26e-09 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 9.35e-09 1gtvA 214 1.02e-08 c.37.1.1 70537 1t0hB 224 3.96e-08 c.37.1.1 106208 2z0hA 197 8.54e-08 1ex7A 186 1.15e-07 c.37.1.1 59537 1t3lA 337 1.82e-07 b.34.2.1,c.37.1.1 106358,106359 2vp4A 230 1.98e-07 1p6xA 334 2.30e-07 c.37.1.1 94195 1ukzA 203 2.99e-07 c.37.1.1 31840 1qhiA 366 3.32e-07 c.37.1.1 31860 2bwjA 199 3.74e-07 1e2kA 331 5.47e-07 c.37.1.1 31854 2axpA 173 6.86e-07 c.37.1.1 127497 1zm7A 230 8.69e-07 1s4qA 228 1.18e-06 c.37.1.1 98507 2cdnA 201 1.43e-06 c.37.1.1 130289 1of1A 376 1.66e-06 c.37.1.1 103924 1ki9A 192 2.02e-06 c.37.1.1 84404 1oe0A 230 2.69e-06 c.37.1.1 92788 1ukz 203 3.33e-06 1qhxA 178 4.29e-06 c.37.1.3 31936 2c95A 196 5.26e-06 1y63A 184 8.39e-06 c.37.1.1 116494 1qf9A 194 1.23e-05 c.37.1.1 31848 1knqA 175 1.35e-05 c.37.1.17 72786 2qgnA 322 2.87e-05 1ckeA 227 3.43e-05 c.37.1.1 31846 3tmkA 216 6.19e-05 c.37.1.1 31920 1uj2A 252 9.07e-05 c.37.1.6 99452 2f6rA 281 0.000122 1kgdA 180 0.000130 c.37.1.1 68582 1kdoA 227 0.000173 c.37.1.1 68478 1vhtA 218 0.000212 c.37.1.1 100700 1xrjA 261 0.000288 c.37.1.6 122256 1e4yA 214 0.000305 c.37.1.1,g.41.2.1 31901,45181 1gky 187 0.000340 2ax4A 198 0.000353 1zd8A 227 0.000362 1e6cA 173 0.000401 c.37.1.2 59296 1nksA 194 0.000581 c.37.1.1 31886 3crrA 323 0.000702 1ltqA 301 0.000736 c.108.1.9,c.37.1.1 78208,78209 3c8uA 208 0.000753 2an9A 207 0.001364 c.37.1.1 127037 1zin 217 0.001398 1khtA 192 0.001422 c.37.1.1 84401 2g1kA 176 0.002123 c.37.1.2 134519 1ak2A 233 0.002203 c.37.1.1,g.41.2.1 31894,45195 2eu8A 216 0.002266 2rhmA 193 0.002299 2rgxA 206 0.002941 1n3bA 216 0.003049 c.37.1.1 79959 1jjvA 206 0.003540 c.37.1.1 71698 2iyvA 184 0.003600 c.37.1.2 137812 2ze7A 253 0.003632 1p3jA 217 0.004343 c.37.1.1,g.41.2.1 94022,94023 2bdtA 189 0.004380 c.37.1.25 128344 1viaA 175 0.007309 c.37.1.2 100754 1ly1A 181 0.007477 c.37.1.1 74334 2ak3A 226 0.007564 c.37.1.1,g.41.2.1 31892,45193 1rkbA 173 0.01036 c.37.1.1 111854 1akyA 220 0.01058 c.37.1.1,g.41.2.1 31896,45197 1zinA 217 0.01235 c.37.1.1,g.41.2.1 31915,45178 2yvuA 186 0.01273 2pezA 179 0.01995 1zuhA 168 0.01996 2p67A 341 0.02030 3be4A 217 0.02133 1nn5A 215 0.02315 c.37.1.1 85892 1m7gA 211 0.02858 c.37.1.4 78724 1s96A 219 0.02891 c.37.1.1 98740 2qt1A 207 0.04407 1kagA 173 0.07269 c.37.1.2 72249 1xjcA 169 0.08052 c.37.1.10 115387 2f1rA 171 0.1069 2r44A 331 0.1578 2ga8A 359 0.1835 1esmA 316 0.2005 c.37.1.6 31953 1e9rA 437 0.2120 c.37.1.11 64827 1nijA 318 0.2466 c.37.1.10,d.237.1.1 85741,85742 2pt5A 168 0.2638 1sq5A 308 0.2647 c.37.1.6 105882 1dekA 241 0.2711 c.37.1.1 31842 2orwA 184 0.2781 1xx6A 191 0.2807 c.37.1.24,g.39.1.14 116139,116140 1a7jA 290 0.3434 c.37.1.6 31952 2eyuA 261 0.3694 2grjA 192 0.4259 1np6A 174 0.4365 c.37.1.10 85954 1nlfA 279 0.4477 c.37.1.11 85850 1x6vA 630 0.4945 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2hf9A 226 0.5057 2oap1 511 0.5199 2vhjA 331 0.6804 1tq4A 413 0.6990 c.37.1.8 107201 2k3aA 155 0.7157 1htwA 158 0.7376 c.37.1.18 71083 1zu4A 320 0.7709 2ixeA 271 0.8061 1a7j 290 0.8392 1z47A 355 0.8513 3b9qA 302 0.8582 1in4A 334 0.8989 a.4.5.11,c.37.1.20 62597,62598 1l2tA 235 0.9113 c.37.1.12 73514 2og2A 359 0.9149 2p5tB 253 0.9256 1gvnB 287 0.9514 c.37.1.21 76354 1pujA 282 0.9750 c.37.1.8 88294 1vplA 256 1.018 c.37.1.12 113966 1g8fA 511 1.048 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2bbsA 290 1.094 1vmaA 306 1.166 a.24.13.1,c.37.1.10 108887,108888 1w44A 331 1.194 c.37.1.11 114147 1njgA 250 1.344 c.37.1.20 85785 2qy9A 309 1.385 2cbzA 237 1.432 1sxjC 340 1.438 a.80.1.1,c.37.1.20 106085,106086 2ff7A 247 1.439 c.37.1.12 133377 2pmkA 243 1.536 1ls1A 295 1.574 a.24.13.1,c.37.1.10 78170,78171 1n2zA 245 1.693 c.92.2.2 79865 1sxjA 511 1.895 a.80.1.1,c.37.1.20 106081,106082 2d2eA 250 1.970 2qi9C 249 2.172 2pzeA 229 2.256 1oxsC 353 2.290 b.40.6.3,c.37.1.12 87519,87520 1r0wA 286 2.315 c.37.1.12 96754 1tq6A 413 2.407 c.37.1.8 107202 1rj9A 304 2.520 a.24.13.1,c.37.1.10 97553,97554 1rz3A 201 2.527 c.37.1.6 98132 2pcjA 224 2.551 1oxxK 353 2.585 b.40.6.3,c.37.1.12 93715,93716 1nsf 273 2.750 1n4aA 252 2.758 c.92.2.2 85317 1a5t 334 2.767 1g6hA 257 2.838 c.37.1.12 60318 1xmiA 291 2.922 c.37.1.12 115489 1j8mF 297 2.935 a.24.13.1,c.37.1.10 62742,62743 2it1A 362 3.028 1b0uA 262 3.030 c.37.1.12 32370 1g8yA 279 3.145 c.37.1.11 32302 1xbtA 193 3.230 c.37.1.24,g.39.1.14 115080,115081 2gzaA 361 3.243 2px0A 296 3.291 1ye8A 178 3.376 c.37.1.11 123010 1gl6A 436 3.414 c.37.1.11 70259 1mkyA 439 3.587 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1svmA 377 3.780 c.37.1.20 112126 1ji0A 240 3.809 c.37.1.12 71665 2pt7A 330 3.816 1ihuA 589 4.003 c.37.1.10,c.37.1.10 62394,62395 2fh5B 214 4.060 c.37.1.8 133478 2c9oA 456 4.561 2chgA 226 5.140 1a5tA 334 5.539 a.80.1.1,c.37.1.20 18450,32423 2jrnA 163 5.557 1knxA 312 6.023 c.98.2.1,c.91.1.2 77459,77460 1g6oA 330 6.104 c.37.1.11 32430 2v26A 784 6.237 2r2aA 199 6.414 1in6A 334 6.518 a.4.5.11,c.37.1.20 62601,62602 2ihyA 279 6.628 1tueA 212 6.698 c.37.1.20 107323 1j8yF 297 6.874 a.24.13.1,c.37.1.10 62747,62748 1n25A 368 6.884 c.37.1.20 85264 1f6bA 198 6.971 c.37.1.8 64986 1bifA 469 7.186 c.37.1.7,c.60.1.4 31961,34003 2bkhA 814 7.442 1yrbA 262 7.587 c.37.1.10 123915 1sxjE 354 7.776 a.80.1.1,c.37.1.20 106089,106090 1w9iA 770 7.837 1ewqA 765 7.987 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2gxaA 274 8.008 1d0yA 761 8.097 b.34.3.1,c.37.1.9 24581,32178 1g291 372 8.588 1sgwA 214 8.948 c.37.1.12 105541 1mvwA 840 9.116 i.15.1.1 79523 1t9hA 307 9.262 b.40.4.5,c.37.1.8 112358,112359 1d2nA 272 9.774 c.37.1.20 32428 1lvk 762 10.65 1xewX 182 11.07 c.37.1.12 115235 2r6fA 972 11.13 1u0jA 267 11.16 c.37.1.20 107546 1w5tA 412 11.17 a.4.5.11,c.37.1.20 114255,114256 1lw7A 365 11.73 c.26.1.3,c.37.1.1 74295,74296 2h17A 181 12.21 2qm8A 337 12.31 2qm0A 275 12.36 2cvhA 220 12.66 2akaA 776 12.76 2h57A 190 12.85 2a5yB 549 13.23 2akaB 299 13.62 c.37.1.8 126914 1lv7A 257 13.67 c.37.1.20 78232 1us8A 147 13.77 c.37.1.12 99859 3b9pA 297 14.15 1d6jA 211 14.75 c.37.1.4 31940 1w7jA 795 16.14 b.34.3.1,c.37.1.9 120688,120689 1qhlA 227 16.17 c.37.1.12 32382 2gdjA 264 16.95 c.37.1.11 135018 3cox 507 17.65 1jx2B 315 18.05 c.37.1.8 67404 1efdN 266 20.43 c.92.2.1 35597 1mwmA 320 21.23 c.55.1.1,c.55.1.1 79580,79581 2pjzA 263 21.31 1cp2A 269 23.37 c.37.1.10 32269 3bosA 242 23.47 1g3qA 237 23.61 c.37.1.10 60237 1bif 469 23.79 2yv5A 302 24.48 1qopA 268 26.73 c.1.2.4 28570 7a3hA 303 31.87 c.1.8.3 28817 2dr3A 247 32.25 1f2tA 149 33.41 c.37.1.12 32373 2nq2C 253 33.59 2j4dA 525 34.20 1ko7A 314 35.51 c.98.2.1,c.91.1.2 72797,72798 1i4nA 251 35.54 c.1.2.4 71114 2hhjA 267 35.57 c.60.1.1 136497 1g55A 343 36.10 c.66.1.26 34247 2q8pA 260 36.21 1tca 317 37.83 1ofuA 320 41.21 c.32.1.1,d.79.2.1 86972,86973 1wywA 230 41.25 2hjgA 436 43.34 1wcv1 257 43.97 2fnaA 357 44.18 a.4.5.11,c.37.1.20 133809,133810 1kidA 203 45.57 c.8.5.1 30771 1cr1A 296 45.86 c.37.1.11 32286 1ycdA 243 46.50 1ax4A 467 47.62 c.67.1.2 34391 2iutA 574 47.69 1srvA 145 48.12 c.8.5.1 30817 1jbkA 195 48.16 c.37.1.20 71631 2z83A 459 50.59 1b5tA 275 51.50 c.1.23.1 29676 1kid 203 52.63 1xwiA 322 52.82 2a9iA 113 55.39 2bonA 332 56.57 2p65A 187 57.20 1fnnA 389 61.01 a.4.5.11,c.37.1.20 16129,32426 2f7lA 455 61.86 2qmoA 220 61.91 1fj2A 232 62.09 c.69.1.14 34720 2phzA 311 62.52 2g6bA 180 64.05 c.37.1.8 134701 1h65A 270 64.16 c.37.1.8 65640 2jdiD 482 64.73 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1wz8A 264 65.30 c.14.1.3 121483 2b8wA 328 65.79 1xclA 235 66.39 c.66.1.16 115127 2chuA 296 66.86 c.92.2.4 130485 2oblA 347 67.51 2f5xA 312 68.78 3bs4A 260 69.51 1w36D 608 69.79 c.37.1.19,c.37.1.19 114128,114129 1tcaA 317 70.55 c.69.1.17 34726 2r7aA 256 71.53 1yqtA 538 72.55 1i52A 236 73.49 c.68.1.13 61767 1ny6A 267 74.58 c.37.1.20 92321 1v7zA 260 77.00 c.125.1.1 100488 2rebA 352 77.18 c.37.1.11,d.48.1.1 32282,38767 2cxxA 190 78.49 c.37.1.8 131013 1vcoA 550 79.18 c.23.16.1,c.37.1.10 108508,108509 1f0nA 285 79.83 c.69.1.3 34636 1i6lA 328 80.97 c.26.1.1 66041 3co4A 312 81.57 2fdxA 138 82.40 c.23.5.1 31192 1gmlA 178 83.19 c.8.5.2 70273 2qgzA 308 83.39 3c5cA 187 83.92 3bdvA 191 85.21 1tibA 269 87.09 c.69.1.17 34738 1zj6A 187 88.34 c.37.1.8 125145 1gt6A 269 88.45 c.69.1.17 76342 1e79D 482 89.03 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317