# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1znwA 207 2.11e-08 c.37.1.1 125412 2qorA 204 4.65e-08 1z6gA 218 4.68e-08 2j41A 207 5.15e-08 2ccjA 205 1.35e-07 1p5zB 263 1.65e-07 c.37.1.1 87815 2pbrA 195 1.83e-07 4tmkA 213 2.53e-07 c.37.1.1 31930 1z8fA 228 2.97e-07 2plrA 213 3.38e-06 1kjwA 295 4.66e-06 b.34.2.1,c.37.1.1 68643,68644 1gtvA 214 5.20e-06 c.37.1.1 70537 1ukzA 203 1.14e-05 c.37.1.1 31840 2bwjA 199 1.39e-05 2z0hA 197 1.74e-05 1ex7A 186 2.76e-05 c.37.1.1 59537 1t3lA 337 3.19e-05 b.34.2.1,c.37.1.1 106358,106359 2axpA 173 6.35e-05 c.37.1.1 127497 1t0hB 224 7.35e-05 c.37.1.1 106208 1s4qA 228 7.91e-05 c.37.1.1 98507 1qhiA 366 9.91e-05 c.37.1.1 31860 1ukz 203 0.000113 1e2kA 331 0.000126 c.37.1.1 31854 2vp4A 230 0.000188 1p6xA 334 0.000224 c.37.1.1 94195 1y63A 184 0.000225 c.37.1.1 116494 2c95A 196 0.000247 1qhxA 178 0.000248 c.37.1.3 31936 1ki9A 192 0.000551 c.37.1.1 84404 2cdnA 201 0.000586 c.37.1.1 130289 1of1A 376 0.000660 c.37.1.1 103924 1oe0A 230 0.000664 c.37.1.1 92788 1zm7A 230 0.000813 2qgnA 322 0.001220 1ckeA 227 0.001624 c.37.1.1 31846 1knqA 175 0.001628 c.37.1.17 72786 1qf9A 194 0.001694 c.37.1.1 31848 1uj2A 252 0.002472 c.37.1.6 99452 1vhtA 218 0.002506 c.37.1.1 100700 1e6cA 173 0.003246 c.37.1.2 59296 2f6rA 281 0.004134 3crrA 323 0.004413 3tmkA 216 0.004551 c.37.1.1 31920 1e4yA 214 0.004555 c.37.1.1,g.41.2.1 31901,45181 1zd8A 227 0.004757 1xrjA 261 0.005132 c.37.1.6 122256 1gky 187 0.006193 1nksA 194 0.007479 c.37.1.1 31886 3c8uA 208 0.007565 2ax4A 198 0.008117 1kdoA 227 0.008726 c.37.1.1 68478 2an9A 207 0.00998 c.37.1.1 127037 2iyvA 184 0.01015 c.37.1.2 137812 2g1kA 176 0.01841 c.37.1.2 134519 2ak3A 226 0.01889 c.37.1.1,g.41.2.1 31892,45193 1n3bA 216 0.01935 c.37.1.1 79959 1ak2A 233 0.02121 c.37.1.1,g.41.2.1 31894,45195 1p3jA 217 0.02264 c.37.1.1,g.41.2.1 94022,94023 2bdtA 189 0.02615 c.37.1.25 128344 2yvuA 186 0.03346 2eu8A 216 0.03397 2rgxA 206 0.03992 1nn5A 215 0.04687 c.37.1.1 85892 1viaA 175 0.06170 c.37.1.2 100754 1kgdA 180 0.06434 c.37.1.1 68582 1kagA 173 0.06694 c.37.1.2 72249 2qt1A 207 0.07147 1zin 217 0.07503 1akyA 220 0.07616 c.37.1.1,g.41.2.1 31896,45197 1jjvA 206 0.07668 c.37.1.1 71698 2pezA 179 0.07696 1zinA 217 0.08162 c.37.1.1,g.41.2.1 31915,45178 2pt5A 168 0.08167 2rhmA 193 0.1037 1rkbA 173 0.1115 c.37.1.1 111854 3be4A 217 0.1149 1m7gA 211 0.1402 c.37.1.4 78724 1s96A 219 0.1427 c.37.1.1 98740 1zuhA 168 0.1438 1khtA 192 0.1449 c.37.1.1 84401 1ltqA 301 0.2126 c.108.1.9,c.37.1.1 78208,78209 2ze7A 253 0.3967 2ga8A 359 0.6693 1sq5A 308 0.7311 c.37.1.6 105882 2p67A 341 0.7845 1esmA 316 1.150 c.37.1.6 31953 2f1rA 171 1.339 1xjcA 169 1.434 c.37.1.10 115387 2bbsA 290 1.681 2orwA 184 1.703 2cbzA 237 1.725 2eyuA 261 1.972 1r0wA 286 2.032 c.37.1.12 96754 1gvnB 287 2.211 c.37.1.21 76354 1xmiA 291 2.265 c.37.1.12 115489 1e9rA 437 2.484 c.37.1.11 64827 2p5tB 253 2.594 1g8fA 511 2.627 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1ly1A 181 2.821 c.37.1.1 74334 1np6A 174 3.058 c.37.1.10 85954 1z47A 355 3.332 1in4A 334 3.615 a.4.5.11,c.37.1.20 62597,62598 2grjA 192 3.731 2pt7A 330 4.211 1xx6A 191 4.362 c.37.1.24,g.39.1.14 116139,116140 2pzeA 229 4.405 2vhjA 331 4.437 2d2eA 250 4.438 1vplA 256 4.617 c.37.1.12 113966 1nijA 318 4.694 c.37.1.10,d.237.1.1 85741,85742 2og2A 359 4.865 2it1A 362 5.028 1tq4A 413 5.450 c.37.1.8 107201 1a7jA 290 5.562 c.37.1.6 31952 1oxsC 353 5.810 b.40.6.3,c.37.1.12 87519,87520 1w44A 331 5.855 c.37.1.11 114147 3b9qA 302 6.450 2pcjA 224 6.765 2fh5B 214 6.776 c.37.1.8 133478 1ji0A 240 6.814 c.37.1.12 71665 1dekA 241 7.416 c.37.1.1 31842 1a7j 290 7.548 1rz3A 201 7.777 c.37.1.6 98132 2qy9A 309 7.876 1l2tA 235 8.702 c.37.1.12 73514 1g6hA 257 8.755 c.37.1.12 60318 1vmaA 306 8.998 a.24.13.1,c.37.1.10 108887,108888 1j8mF 297 9.016 a.24.13.1,c.37.1.10 62742,62743 2ixeA 271 9.339 2ff7A 247 9.435 c.37.1.12 133377 1mkyA 439 10.12 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1htwA 158 10.40 c.37.1.18 71083 1b0uA 262 10.53 c.37.1.12 32370 1oxxK 353 11.16 b.40.6.3,c.37.1.12 93715,93716 1ihuA 589 11.17 c.37.1.10,c.37.1.10 62394,62395 2px0A 296 11.42 3b9pA 297 11.56 2bkhA 814 11.90 1in6A 334 12.06 a.4.5.11,c.37.1.20 62601,62602 1sxjC 340 12.12 a.80.1.1,c.37.1.20 106085,106086 1x6vA 630 12.28 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2ihyA 279 12.52 2r44A 331 12.70 1sxjA 511 14.92 a.80.1.1,c.37.1.20 106081,106082 1nlfA 279 14.98 c.37.1.11 85850 2pmkA 243 14.98 1pujA 282 15.09 c.37.1.8 88294 1w9iA 770 15.09 1rj9A 304 15.26 a.24.13.1,c.37.1.10 97553,97554 2k3aA 155 15.34 2v26A 784 15.48 1t9hA 307 15.62 b.40.4.5,c.37.1.8 112358,112359 1d0yA 761 15.64 b.34.3.1,c.37.1.9 24581,32178 1lvk 762 15.85 1lw7A 365 16.07 c.26.1.3,c.37.1.1 74295,74296 1mvwA 840 16.10 i.15.1.1 79523 1zu4A 320 16.65 1sgwA 214 16.88 c.37.1.12 105541 2akaA 776 17.01 1ls1A 295 17.65 a.24.13.1,c.37.1.10 78170,78171 1nsf 273 17.96 1r1dA 247 18.51 c.69.1.29 96813 2chgA 226 20.81 1g6oA 330 21.19 c.37.1.11 32430 1njgA 250 21.31 c.37.1.20 85785 1w7jA 795 21.65 b.34.3.1,c.37.1.9 120688,120689 1knxA 312 22.52 c.98.2.1,c.91.1.2 77459,77460 2pjzA 263 22.58 1jx2B 315 23.20 c.37.1.8 67404 1ye8A 178 23.53 c.37.1.11 123010 1w5tA 412 24.19 a.4.5.11,c.37.1.20 114255,114256 2akaB 299 24.35 c.37.1.8 126914 1yqtA 538 24.41 1n2zA 245 24.89 c.92.2.2 79865 1xwiA 322 25.52 1tq6A 413 27.62 c.37.1.8 107202 2r6fA 972 27.63 2gdjA 264 29.60 c.37.1.11 135018 1efdN 266 29.70 c.92.2.1 35597 2gzaA 361 30.32 2qi9C 249 30.73 1g8yA 279 30.74 c.37.1.11 32302 1n4aA 252 30.99 c.92.2.2 85317 2f7tA 227 31.97 1d2nA 272 32.37 c.37.1.20 32428 2dr3A 247 34.47 1a5t 334 35.83 2hf9A 226 36.31 1tca 317 36.87 1odfA 290 37.24 c.37.1.6 92782 1ny6A 267 38.34 c.37.1.20 92321 2qm8A 337 39.01 2nq2C 253 40.78 1wywA 230 41.93 1sxjE 354 42.24 a.80.1.1,c.37.1.20 106089,106090 1ycdA 243 43.27 1j8yF 297 44.09 a.24.13.1,c.37.1.10 62747,62748 1egaA 301 44.40 c.37.1.8,d.52.3.1 32150,38836 2p65A 187 47.99 1a5tA 334 48.54 a.80.1.1,c.37.1.20 18450,32423 1xbtA 193 50.01 c.37.1.24,g.39.1.14 115080,115081 2oap1 511 51.11 1f6bA 198 51.25 c.37.1.8 64986 1g55A 343 52.12 c.66.1.26 34247 2yv5A 302 52.52 1tueA 212 53.20 c.37.1.20 107323 1lv7A 257 53.62 c.37.1.20 78232 2qm0A 275 54.35 1bupA 386 57.73 c.55.1.1,c.55.1.1 33377,33378 5nul 138 58.67 1cp2A 269 59.58 c.37.1.10 32269 1d6jA 211 60.51 c.37.1.4 31940 2c9oA 456 61.06 2fnaA 357 62.95 a.4.5.11,c.37.1.20 133809,133810 1svmA 377 63.04 c.37.1.20 112126 1ko7A 314 64.90 c.98.2.1,c.91.1.2 72797,72798 2yvaA 196 65.02 1gl6A 436 65.75 c.37.1.11 70259 2hhjA 267 66.76 c.60.1.1 136497 1h65A 270 70.89 c.37.1.8 65640 1qhlA 227 71.49 c.37.1.12 32382 2qgzA 308 72.37 3cox 507 72.44 2reb 352 73.84 1tqhA 247 75.56 c.69.1.29 107225 1r88A 280 77.26 c.69.1.3 97219 1g3qA 237 79.29 c.37.1.10 60237 2b8wA 328 79.55 3bosA 242 80.22 1cr1A 296 82.30 c.37.1.11 32286 1zi8A 236 87.18 1srvA 145 87.98 c.8.5.1 30817 1quuA 250 89.45 a.7.1.1,a.7.1.1 16320,16321