# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j41A 207 3.63e-10 1z6gA 218 3.95e-10 2qorA 204 4.73e-10 1znwA 207 5.07e-10 c.37.1.1 125412 1p5zB 263 7.71e-10 c.37.1.1 87815 2ccjA 205 1.84e-09 4tmkA 213 2.15e-09 c.37.1.1 31930 2pbrA 195 2.64e-09 1z8fA 228 7.19e-09 1kjwA 295 2.87e-08 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 9.41e-08 1gtvA 214 1.26e-07 c.37.1.1 70537 2z0hA 197 3.74e-07 1t0hB 224 4.40e-07 c.37.1.1 106208 1ex7A 186 8.66e-07 c.37.1.1 59537 2vp4A 230 1.09e-06 1t3lA 337 1.80e-06 b.34.2.1,c.37.1.1 106358,106359 1p6xA 334 1.86e-06 c.37.1.1 94195 2bwjA 199 3.00e-06 1ukzA 203 4.01e-06 c.37.1.1 31840 1qhiA 366 4.27e-06 c.37.1.1 31860 1s4qA 228 4.90e-06 c.37.1.1 98507 1e2kA 331 5.92e-06 c.37.1.1 31854 2axpA 173 6.74e-06 c.37.1.1 127497 1zm7A 230 7.57e-06 1ki9A 192 1.78e-05 c.37.1.1 84404 1of1A 376 1.80e-05 c.37.1.1 103924 1oe0A 230 2.20e-05 c.37.1.1 92788 2c95A 196 2.30e-05 2cdnA 201 3.80e-05 c.37.1.1 130289 1qhxA 178 4.39e-05 c.37.1.3 31936 1y63A 184 8.35e-05 c.37.1.1 116494 2qgnA 322 8.97e-05 1ukz 203 0.000121 1vhtA 218 0.000233 c.37.1.1 100700 1knqA 175 0.000256 c.37.1.17 72786 1ckeA 227 0.000334 c.37.1.1 31846 1xrjA 261 0.000534 c.37.1.6 122256 1kgdA 180 0.000661 c.37.1.1 68582 1uj2A 252 0.000663 c.37.1.6 99452 1e4yA 214 0.000721 c.37.1.1,g.41.2.1 31901,45181 1qf9A 194 0.000894 c.37.1.1 31848 1zd8A 227 0.000966 3tmkA 216 0.001059 c.37.1.1 31920 1e6cA 173 0.001241 c.37.1.2 59296 2f6rA 281 0.001339 1gky 187 0.001339 3crrA 323 0.001663 1nksA 194 0.001970 c.37.1.1 31886 1kdoA 227 0.004041 c.37.1.1 68478 3c8uA 208 0.004334 2an9A 207 0.004795 c.37.1.1 127037 2eu8A 216 0.005711 1n3bA 216 0.007063 c.37.1.1 79959 1ak2A 233 0.007069 c.37.1.1,g.41.2.1 31894,45195 2iyvA 184 0.007515 c.37.1.2 137812 2ze7A 253 0.008743 2rgxA 206 0.008996 1ltqA 301 0.009191 c.108.1.9,c.37.1.1 78208,78209 2ak3A 226 0.009195 c.37.1.1,g.41.2.1 31892,45193 2qt1A 207 0.01036 2g1kA 176 0.01078 c.37.1.2 134519 1jjvA 206 0.01148 c.37.1.1 71698 2bdtA 189 0.01721 c.37.1.25 128344 1khtA 192 0.01799 c.37.1.1 84401 1nn5A 215 0.01982 c.37.1.1 85892 2ax4A 198 0.01999 1akyA 220 0.02003 c.37.1.1,g.41.2.1 31896,45197 1p3jA 217 0.02794 c.37.1.1,g.41.2.1 94022,94023 1viaA 175 0.02813 c.37.1.2 100754 1zinA 217 0.03263 c.37.1.1,g.41.2.1 31915,45178 2rhmA 193 0.03342 3be4A 217 0.03558 1zuhA 168 0.04212 1m7gA 211 0.05193 c.37.1.4 78724 1rkbA 173 0.05463 c.37.1.1 111854 2p67A 341 0.07412 1zin 217 0.08067 2yvuA 186 0.1145 1kagA 173 0.1249 c.37.1.2 72249 1s96A 219 0.1296 c.37.1.1 98740 2pezA 179 0.1468 1xjcA 169 0.1984 c.37.1.10 115387 1sq5A 308 0.2134 c.37.1.6 105882 1ly1A 181 0.2402 c.37.1.1 74334 2pt5A 168 0.2410 1esmA 316 0.2895 c.37.1.6 31953 2f1rA 171 0.2907 2r44A 331 0.3607 2ga8A 359 0.4356 2orwA 184 0.4757 1xx6A 191 0.4855 c.37.1.24,g.39.1.14 116139,116140 2bbsA 290 0.4894 2eyuA 261 0.5112 1np6A 174 0.5715 c.37.1.10 85954 1dekA 241 0.6315 c.37.1.1 31842 1nijA 318 0.7943 c.37.1.10,d.237.1.1 85741,85742 1e9rA 437 0.8188 c.37.1.11 64827 1nlfA 279 0.8401 c.37.1.11 85850 2cbzA 237 0.9173 2vhjA 331 1.020 1g8fA 511 1.088 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1vplA 256 1.239 c.37.1.12 113966 2d2eA 250 1.342 2gzaA 361 1.347 2p5tB 253 1.398 2hf9A 226 1.425 2ixeA 271 1.442 1xmiA 291 1.490 c.37.1.12 115489 2og2A 359 1.495 1w44A 331 1.573 c.37.1.11 114147 1zu4A 320 1.707 2ff7A 247 1.738 c.37.1.12 133377 2pzeA 229 1.771 2oap1 511 1.837 2k3aA 155 1.907 1in4A 334 2.016 a.4.5.11,c.37.1.20 62597,62598 1z47A 355 2.053 2pmkA 243 2.191 1r0wA 286 2.210 c.37.1.12 96754 1ls1A 295 2.292 a.24.13.1,c.37.1.10 78170,78171 1g6hA 257 2.298 c.37.1.12 60318 1htwA 158 2.366 c.37.1.18 71083 1vmaA 306 2.371 a.24.13.1,c.37.1.10 108887,108888 1rz3A 201 2.374 c.37.1.6 98132 1njgA 250 2.507 c.37.1.20 85785 1sxjC 340 2.702 a.80.1.1,c.37.1.20 106085,106086 2grjA 192 2.709 1a7jA 290 2.781 c.37.1.6 31952 1gvnB 287 2.787 c.37.1.21 76354 1pujA 282 2.868 c.37.1.8 88294 1tq4A 413 2.910 c.37.1.8 107201 1n2zA 245 2.991 c.92.2.2 79865 2pt7A 330 3.050 1j8mF 297 3.151 a.24.13.1,c.37.1.10 62742,62743 3b9qA 302 3.226 2qy9A 309 3.285 1g6oA 330 3.353 c.37.1.11 32430 2it1A 362 3.669 1ji0A 240 3.779 c.37.1.12 71665 1sxjA 511 4.063 a.80.1.1,c.37.1.20 106081,106082 1b0uA 262 4.098 c.37.1.12 32370 2qi9C 249 4.236 1g8yA 279 4.240 c.37.1.11 32302 1a5t 334 4.250 2fh5B 214 4.269 c.37.1.8 133478 1l2tA 235 4.291 c.37.1.12 73514 1ihuA 589 4.401 c.37.1.10,c.37.1.10 62394,62395 1nsf 273 4.489 2ihyA 279 4.800 1mkyA 439 5.168 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1n4aA 252 5.207 c.92.2.2 85317 1x6vA 630 5.580 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1rj9A 304 6.003 a.24.13.1,c.37.1.10 97553,97554 1xbtA 193 6.005 c.37.1.24,g.39.1.14 115080,115081 1svmA 377 6.103 c.37.1.20 112126 2c9oA 456 6.394 1tq6A 413 6.831 c.37.1.8 107202 2pcjA 224 6.878 1ye8A 178 6.900 c.37.1.11 123010 1xewX 182 7.490 c.37.1.12 115235 2bkhA 814 7.772 1tueA 212 7.922 c.37.1.20 107323 2px0A 296 8.211 1in6A 334 8.404 a.4.5.11,c.37.1.20 62601,62602 1j8yF 297 8.418 a.24.13.1,c.37.1.10 62747,62748 1a5tA 334 8.620 a.80.1.1,c.37.1.20 18450,32423 1a7j 290 8.621 1d0yA 761 8.687 b.34.3.1,c.37.1.9 24581,32178 1knxA 312 8.992 c.98.2.1,c.91.1.2 77459,77460 2v26A 784 9.123 2r2aA 199 9.283 1w9iA 770 9.611 1oxsC 353 9.629 b.40.6.3,c.37.1.12 87519,87520 1sxjE 354 9.791 a.80.1.1,c.37.1.20 106089,106090 2hhjA 267 9.98 c.60.1.1 136497 1lvk 762 10.42 2jrnA 163 10.65 2chgA 226 10.70 2akaA 776 10.95 1sgwA 214 12.60 c.37.1.12 105541 1us8A 147 12.72 c.37.1.12 99859 1w7jA 795 13.22 b.34.3.1,c.37.1.9 120688,120689 3b9pA 297 14.29 1n25A 368 14.76 c.37.1.20 85264 1gl6A 436 14.95 c.37.1.11 70259 1oxxK 353 15.84 b.40.6.3,c.37.1.12 93715,93716 1d6jA 211 17.59 c.37.1.4 31940 2akaB 299 17.72 c.37.1.8 126914 1xwiA 322 19.01 2dr3A 247 19.12 2nq2C 253 19.93 1ewqA 765 20.54 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1w5tA 412 20.73 a.4.5.11,c.37.1.20 114255,114256 2r6fA 972 20.76 1mvwA 840 20.91 i.15.1.1 79523 1t9hA 307 21.25 b.40.4.5,c.37.1.8 112358,112359 2pjzA 263 21.34 1d2nA 272 22.88 c.37.1.20 32428 2cvhA 220 23.55 2gxaA 274 24.15 3bosA 242 25.79 1g3qA 237 25.80 c.37.1.10 60237 2h17A 181 27.31 2gdjA 264 27.80 c.37.1.11 135018 1u0jA 267 28.21 c.37.1.20 107546 1f2tA 149 29.13 c.37.1.12 32373 1lv7A 257 29.86 c.37.1.20 78232 2qm8A 337 30.52 1yqtA 538 31.05 7a3hA 303 31.34 c.1.8.3 28817 1f6bA 198 31.95 c.37.1.8 64986 1jbkA 195 34.01 c.37.1.20 71631 2iutA 574 35.40 2qm0A 275 36.09 3cox 507 36.85 2h57A 190 39.67 1ko7A 314 39.80 c.98.2.1,c.91.1.2 72797,72798 1bifA 469 41.00 c.37.1.7,c.60.1.4 31961,34003 1w36D 608 42.47 c.37.1.19,c.37.1.19 114128,114129 1g55A 343 42.54 c.66.1.26 34247 1cp2A 269 42.55 c.37.1.10 32269 1jx2B 315 44.17 c.37.1.8 67404 1tca 317 44.78 1wywA 230 45.29 2phzA 311 45.41 1h65A 270 45.77 c.37.1.8 65640 2fnaA 357 48.06 a.4.5.11,c.37.1.20 133809,133810 2yv5A 302 49.14 1mwmA 320 49.93 c.55.1.1,c.55.1.1 79580,79581 1efdN 266 49.94 c.92.2.1 35597 2r7aA 256 50.29 2g6bA 180 51.15 c.37.1.8 134701 1g291 372 52.06 1ycdA 243 53.04 1qhlA 227 53.37 c.37.1.12 32382 1b5tA 275 55.80 c.1.23.1 29676 1fj2A 232 56.76 c.69.1.14 34720 2a5yB 549 57.12 2oblA 347 57.23 1wcv1 257 59.31 1ofuA 320 61.05 c.32.1.1,d.79.2.1 86972,86973 1cr1A 296 61.21 c.37.1.11 32286 2qmoA 220 63.07 2z83A 459 66.74 2q8pA 260 69.67 1pfkA 320 70.00 c.89.1.1 35575 2z1aA 552 72.09 2b8wA 328 74.07 5nul 138 75.38 2jdiD 482 78.13 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1gg4A 452 78.91 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2yvtA 260 80.80 1ny6A 267 81.69 c.37.1.20 92321 3bs4A 260 81.83 1fnnA 389 84.44 a.4.5.11,c.37.1.20 16129,32426 2j4dA 525 84.71 1zj6A 187 88.57 c.37.1.8 125145