# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 2.07e-06 1z6gA 218 2.38e-06 2j41A 207 2.48e-06 1znwA 207 2.54e-06 c.37.1.1 125412 2pbrA 195 5.71e-06 1p5zB 263 7.53e-06 c.37.1.1 87815 2ccjA 205 7.64e-06 4tmkA 213 9.50e-06 c.37.1.1 31930 1z8fA 228 1.98e-05 1kjwA 295 3.65e-05 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 9.17e-05 1gtvA 214 0.000109 c.37.1.1 70537 1ex7A 186 0.000210 c.37.1.1 59537 2z0hA 197 0.000228 1t0hB 224 0.000386 c.37.1.1 106208 2vp4A 230 0.000636 2axpA 173 0.000655 c.37.1.1 127497 1s4qA 228 0.000656 c.37.1.1 98507 2bwjA 199 0.000884 1p6xA 334 0.001174 c.37.1.1 94195 1qhiA 366 0.001287 c.37.1.1 31860 1ukzA 203 0.001462 c.37.1.1 31840 1t3lA 337 0.001555 b.34.2.1,c.37.1.1 106358,106359 2cdnA 201 0.002411 c.37.1.1 130289 1zm7A 230 0.002459 1y63A 184 0.003112 c.37.1.1 116494 2c95A 196 0.003403 1e2kA 331 0.003836 c.37.1.1 31854 1ki9A 192 0.003973 c.37.1.1 84404 1oe0A 230 0.004592 c.37.1.1 92788 1qhxA 178 0.005584 c.37.1.3 31936 1ukz 203 0.006601 2qgnA 322 0.007148 1of1A 376 0.007226 c.37.1.1 103924 1ckeA 227 0.01171 c.37.1.1 31846 1xrjA 261 0.01265 c.37.1.6 122256 1knqA 175 0.01344 c.37.1.17 72786 1vhtA 218 0.01596 c.37.1.1 100700 1qf9A 194 0.01607 c.37.1.1 31848 3tmkA 216 0.01681 c.37.1.1 31920 3crrA 323 0.01788 1uj2A 252 0.01976 c.37.1.6 99452 1kgdA 180 0.02303 c.37.1.1 68582 1gky 187 0.02443 1e4yA 214 0.02512 c.37.1.1,g.41.2.1 31901,45181 1kdoA 227 0.02692 c.37.1.1 68478 1zd8A 227 0.04347 2f6rA 281 0.04371 1e6cA 173 0.04464 c.37.1.2 59296 1nksA 194 0.05000 c.37.1.1 31886 2an9A 207 0.06420 c.37.1.1 127037 2ax4A 198 0.06692 2eu8A 216 0.07962 1ltqA 301 0.09534 c.108.1.9,c.37.1.1 78208,78209 1n3bA 216 0.1044 c.37.1.1 79959 2qt1A 207 0.1223 3c8uA 208 0.1282 2bdtA 189 0.1460 c.37.1.25 128344 1nn5A 215 0.1486 c.37.1.1 85892 2rhmA 193 0.1537 2ze7A 253 0.1688 1khtA 192 0.1713 c.37.1.1 84401 1jjvA 206 0.1881 c.37.1.1 71698 1ak2A 233 0.1962 c.37.1.1,g.41.2.1 31894,45195 2pezA 179 0.2059 2rgxA 206 0.2074 2iyvA 184 0.2143 c.37.1.2 137812 1ly1A 181 0.2355 c.37.1.1 74334 2g1kA 176 0.2398 c.37.1.2 134519 1s96A 219 0.2582 c.37.1.1 98740 1m7gA 211 0.2920 c.37.1.4 78724 2ak3A 226 0.3242 c.37.1.1,g.41.2.1 31892,45193 1p3jA 217 0.3425 c.37.1.1,g.41.2.1 94022,94023 1zin 217 0.3671 1viaA 175 0.4023 c.37.1.2 100754 2pt5A 168 0.4189 1akyA 220 0.4548 c.37.1.1,g.41.2.1 31896,45197 1rkbA 173 0.5008 c.37.1.1 111854 3be4A 217 0.5155 1zuhA 168 0.5381 1zinA 217 0.5688 c.37.1.1,g.41.2.1 31915,45178 1sq5A 308 0.6943 c.37.1.6 105882 2yvuA 186 0.8779 1kagA 173 1.339 c.37.1.2 72249 2oap1 511 1.396 2bbsA 290 1.731 1xjcA 169 1.817 c.37.1.10 115387 2og2A 359 1.833 2p67A 341 2.192 2r44A 331 2.360 2ga8A 359 2.406 1esmA 316 2.559 c.37.1.6 31953 2orwA 184 2.776 1g8fA 511 2.989 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1x6vA 630 3.237 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2qi9C 249 3.340 2f1rA 171 3.518 2pt7A 330 4.216 3b9qA 302 4.306 2it1A 362 4.328 2eyuA 261 4.544 1in4A 334 4.859 a.4.5.11,c.37.1.20 62597,62598 1nlfA 279 4.876 c.37.1.11 85850 2grjA 192 5.224 1e9rA 437 5.347 c.37.1.11 64827 2gzaA 361 5.478 1dekA 241 5.643 c.37.1.1 31842 1zu4A 320 6.376 2d2eA 250 6.493 1sxjA 511 6.597 a.80.1.1,c.37.1.20 106081,106082 1z47A 355 6.706 2ixeA 271 6.780 1xmiA 291 7.246 c.37.1.12 115489 1xx6A 191 7.513 c.37.1.24,g.39.1.14 116139,116140 1g8yA 279 7.632 c.37.1.11 32302 1b0uA 262 7.781 c.37.1.12 32370 1np6A 174 8.339 c.37.1.10 85954 1jx2B 315 8.552 c.37.1.8 67404 2vhjA 331 8.735 1vplA 256 8.819 c.37.1.12 113966 1htwA 158 9.400 c.37.1.18 71083 1ji0A 240 9.559 c.37.1.12 71665 1sxjC 340 9.900 a.80.1.1,c.37.1.20 106085,106086 1rz3A 201 10.03 c.37.1.6 98132 2ff7A 247 10.67 c.37.1.12 133377 2cbzA 237 10.69 1d2nA 272 10.95 c.37.1.20 32428 1mkyA 439 11.45 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1pujA 282 11.46 c.37.1.8 88294 1ls1A 295 11.52 a.24.13.1,c.37.1.10 78170,78171 2p5tB 253 11.61 1tq6A 413 11.72 c.37.1.8 107202 1l2tA 235 11.97 c.37.1.12 73514 1njgA 250 12.64 c.37.1.20 85785 1g6oA 330 13.22 c.37.1.11 32430 2pmkA 243 13.49 2j4dA 525 13.57 1n4aA 252 14.15 c.92.2.2 85317 1g6hA 257 14.18 c.37.1.12 60318 2ihyA 279 14.47 1n2zA 245 14.77 c.92.2.2 79865 1r0wA 286 14.78 c.37.1.12 96754 1tueA 212 15.16 c.37.1.20 107323 1xbtA 193 15.24 c.37.1.24,g.39.1.14 115080,115081 2iutA 574 15.69 1a7jA 290 15.99 c.37.1.6 31952 1oxsC 353 16.20 b.40.6.3,c.37.1.12 87519,87520 2c9oA 456 16.57 2a5yB 549 16.94 2bkhA 814 17.34 2r2aA 199 17.91 3bosA 242 18.16 2px0A 296 18.18 2fh5B 214 18.64 c.37.1.8 133478 2v26A 784 18.94 1j8mF 297 19.03 a.24.13.1,c.37.1.10 62742,62743 1tq4A 413 19.54 c.37.1.8 107201 1w44A 331 20.32 c.37.1.11 114147 1vmaA 306 21.33 a.24.13.1,c.37.1.10 108887,108888 1sgwA 214 21.34 c.37.1.12 105541 2qy9A 309 21.54 1oxxK 353 22.63 b.40.6.3,c.37.1.12 93715,93716 1h8eA 510 22.83 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1gl6A 436 23.30 c.37.1.11 70259 2pcjA 224 23.33 1xwl 580 23.64 1lv7A 257 24.09 c.37.1.20 78232 7a3hA 303 24.41 c.1.8.3 28817 2gdjA 264 24.85 c.37.1.11 135018 1svmA 377 25.61 c.37.1.20 112126 1a7j 290 26.85 2pjzA 263 27.76 1e79D 482 28.22 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1w7jA 795 28.39 b.34.3.1,c.37.1.9 120688,120689 1xewX 182 28.83 c.37.1.12 115235 3cox 507 29.65 1gg4A 452 30.89 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2jrnA 163 31.63 2rebA 352 32.42 c.37.1.11,d.48.1.1 32282,38767 1cr1A 296 33.55 c.37.1.11 32286 1sxjE 354 34.22 a.80.1.1,c.37.1.20 106089,106090 2hf9A 226 34.44 2cvhA 220 34.74 2chgA 226 34.93 2k3aA 155 35.59 2hldD 478 37.08 2gxaA 274 38.85 2pzeA 229 40.20 1w5tA 412 40.45 a.4.5.11,c.37.1.20 114255,114256 1jbkA 195 41.37 c.37.1.20 71631 2nq2C 253 41.91 1d3vA 323 42.05 c.42.1.1 32559 1g291 372 42.75 1nijA 318 43.45 c.37.1.10,d.237.1.1 85741,85742 1p3dA 475 44.08 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 3b9pA 297 44.93 2pyxA 526 46.27 1mwmA 320 46.41 c.55.1.1,c.55.1.1 79580,79581 1lw7A 365 46.98 c.26.1.3,c.37.1.1 74295,74296 1d2kA 392 49.64 c.1.8.5,d.26.3.1 29008,38442 2olrA 540 50.72 c.91.1.1,c.109.1.1 139140,139141 1wywA 230 52.10 1j8yF 297 52.95 a.24.13.1,c.37.1.10 62747,62748 1u0jA 267 53.24 c.37.1.20 107546 3beoA 375 53.31 1o7dD 282 53.54 1w9iA 770 53.91 2reb 352 54.18 1us8A 147 54.53 c.37.1.12 99859 1nsf 273 56.66 1d0yA 761 57.19 b.34.3.1,c.37.1.9 24581,32178 1cp2A 269 58.18 c.37.1.10 32269 1rj9A 304 58.40 a.24.13.1,c.37.1.10 97553,97554 2bonA 332 59.37 2p65A 187 60.17 1pfkA 320 60.45 c.89.1.1 35575 2yv5A 302 62.26 1yrbA 262 62.71 c.37.1.10 123915 1eg7A 557 62.81 c.37.1.10 32241 1z5vA 474 64.55 1in6A 334 65.29 a.4.5.11,c.37.1.20 62601,62602 1mvwA 840 65.39 i.15.1.1 79523 1tib 269 65.58 1vcoA 550 66.21 c.23.16.1,c.37.1.10 108508,108509 1w36D 608 69.03 c.37.1.19,c.37.1.19 114128,114129 2f7tA 227 69.77 1g3qA 237 69.81 c.37.1.10 60237 2b8tA 223 70.49 c.37.1.24,g.39.1.14 128109,128110 2akaA 776 73.24 2o0mA 345 73.36 1h65A 270 73.99 c.37.1.8 65640 2h57A 190 78.46 2dkaA 544 79.65 2h17A 181 79.68 1b5tA 275 79.85 c.1.23.1 29676 1oy3D 282 80.11 d.211.1.1 87554 1lf6A 684 80.67 a.102.1.5,b.30.5.5 77918,77919 1f6bA 198 81.64 c.37.1.8 64986 1tcaA 317 81.69 c.69.1.17 34726 1fj2A 232 82.48 c.69.1.14 34720 1yqtA 538 83.01 1tuoA 464 83.51 1l6rA 227 85.44 c.108.1.10 77768 1qh8B 519 86.89 c.92.2.3 35634 1jdwA 423 87.15 d.126.1.2 41129 5nul 138 87.52 2phzA 311 87.60 3bh0A 315 88.39 1w78A 422 88.78 1lvk 762 88.85