# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j41A 207 2.91e-10 1znwA 207 3.37e-10 c.37.1.1 125412 1z6gA 218 3.97e-10 2qorA 204 4.03e-10 1p5zB 263 1.17e-09 c.37.1.1 87815 2ccjA 205 2.68e-09 4tmkA 213 3.13e-09 c.37.1.1 31930 2pbrA 195 3.53e-09 1z8fA 228 4.89e-09 1kjwA 295 2.05e-08 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 1.13e-07 1gtvA 214 1.53e-07 c.37.1.1 70537 1t0hB 224 4.01e-07 c.37.1.1 106208 2z0hA 197 5.66e-07 1ex7A 186 7.36e-07 c.37.1.1 59537 2vp4A 230 1.64e-06 1t3lA 337 1.74e-06 b.34.2.1,c.37.1.1 106358,106359 1p6xA 334 2.31e-06 c.37.1.1 94195 2bwjA 199 2.90e-06 1ukzA 203 3.39e-06 c.37.1.1 31840 1s4qA 228 3.68e-06 c.37.1.1 98507 1qhiA 366 5.94e-06 c.37.1.1 31860 2axpA 173 6.89e-06 c.37.1.1 127497 1e2kA 331 8.57e-06 c.37.1.1 31854 1zm7A 230 1.01e-05 1ki9A 192 2.34e-05 c.37.1.1 84404 1of1A 376 2.45e-05 c.37.1.1 103924 2c95A 196 2.55e-05 1oe0A 230 3.70e-05 c.37.1.1 92788 1qhxA 178 4.00e-05 c.37.1.3 31936 2cdnA 201 4.71e-05 c.37.1.1 130289 1y63A 184 7.97e-05 c.37.1.1 116494 1ukz 203 0.000118 2qgnA 322 0.000155 1knqA 175 0.000191 c.37.1.17 72786 1vhtA 218 0.000210 c.37.1.1 100700 1ckeA 227 0.000211 c.37.1.1 31846 1kgdA 180 0.000361 c.37.1.1 68582 1xrjA 261 0.000532 c.37.1.6 122256 1uj2A 252 0.000574 c.37.1.6 99452 1gky 187 0.000693 2f6rA 281 0.000809 1e4yA 214 0.000909 c.37.1.1,g.41.2.1 31901,45181 1zd8A 227 0.001042 3tmkA 216 0.001077 c.37.1.1 31920 1qf9A 194 0.001117 c.37.1.1 31848 2an9A 207 0.001994 c.37.1.1 127037 1nksA 194 0.002151 c.37.1.1 31886 1e6cA 173 0.002213 c.37.1.2 59296 1kdoA 227 0.002464 c.37.1.1 68478 3crrA 323 0.002834 3c8uA 208 0.003820 1n3bA 216 0.004611 c.37.1.1 79959 2iyvA 184 0.006498 c.37.1.2 137812 1jjvA 206 0.007550 c.37.1.1 71698 1ak2A 233 0.007771 c.37.1.1,g.41.2.1 31894,45195 2g1kA 176 0.007893 c.37.1.2 134519 2eu8A 216 0.008764 2ze7A 253 0.009240 2ak3A 226 0.009686 c.37.1.1,g.41.2.1 31892,45193 2rgxA 206 0.01023 2qt1A 207 0.01218 1khtA 192 0.01468 c.37.1.1 84401 1nn5A 215 0.01575 c.37.1.1 85892 1ltqA 301 0.01741 c.108.1.9,c.37.1.1 78208,78209 1akyA 220 0.02279 c.37.1.1,g.41.2.1 31896,45197 1viaA 175 0.02481 c.37.1.2 100754 2ax4A 198 0.02726 1p3jA 217 0.02923 c.37.1.1,g.41.2.1 94022,94023 2bdtA 189 0.03168 c.37.1.25 128344 1zuhA 168 0.03271 2rhmA 193 0.03344 3be4A 217 0.03387 1zinA 217 0.03393 c.37.1.1,g.41.2.1 31915,45178 1m7gA 211 0.03709 c.37.1.4 78724 1rkbA 173 0.05540 c.37.1.1 111854 1s96A 219 0.05819 c.37.1.1 98740 2p67A 341 0.06701 1zin 217 0.07446 1kagA 173 0.1105 c.37.1.2 72249 2yvuA 186 0.1567 1sq5A 308 0.1717 c.37.1.6 105882 1xjcA 169 0.1776 c.37.1.10 115387 2pezA 179 0.1982 2pt5A 168 0.2107 1esmA 316 0.2283 c.37.1.6 31953 2f1rA 171 0.3071 2r44A 331 0.3919 2ga8A 359 0.3931 1xx6A 191 0.4681 c.37.1.24,g.39.1.14 116139,116140 1ly1A 181 0.5120 c.37.1.1 74334 2orwA 184 0.5667 2eyuA 261 0.5679 1np6A 174 0.5993 c.37.1.10 85954 1nijA 318 0.6335 c.37.1.10,d.237.1.1 85741,85742 1dekA 241 0.6513 c.37.1.1 31842 2bbsA 290 0.7193 1nlfA 279 0.9093 c.37.1.11 85850 2cbzA 237 0.9763 1e9rA 437 1.135 c.37.1.11 64827 1tq4A 413 1.220 c.37.1.8 107201 2d2eA 250 1.229 2grjA 192 1.277 2p5tB 253 1.317 2vhjA 331 1.378 1g8fA 511 1.402 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1vplA 256 1.502 c.37.1.12 113966 2og2A 359 1.578 1a7jA 290 1.641 c.37.1.6 31952 1htwA 158 1.709 c.37.1.18 71083 2hf9A 226 1.731 1z47A 355 1.750 1zu4A 320 1.852 2ixeA 271 1.905 2pzeA 229 2.011 1xmiA 291 2.016 c.37.1.12 115489 2ff7A 247 2.163 c.37.1.12 133377 1w44A 331 2.172 c.37.1.11 114147 2oap1 511 2.218 1r0wA 286 2.430 c.37.1.12 96754 1in4A 334 2.432 a.4.5.11,c.37.1.20 62597,62598 1vmaA 306 2.448 a.24.13.1,c.37.1.10 108887,108888 2gzaA 361 2.468 2k3aA 155 2.606 1rz3A 201 2.647 c.37.1.6 98132 2qi9C 249 2.737 2pmkA 243 2.795 1l2tA 235 2.809 c.37.1.12 73514 1sxjC 340 3.007 a.80.1.1,c.37.1.20 106085,106086 2pt7A 330 3.018 1gvnB 287 3.035 c.37.1.21 76354 1g6hA 257 3.168 c.37.1.12 60318 1njgA 250 3.522 c.37.1.20 85785 2qy9A 309 3.591 1j8mF 297 3.614 a.24.13.1,c.37.1.10 62742,62743 1n2zA 245 3.646 c.92.2.2 79865 2it1A 362 3.738 3b9qA 302 3.849 1ls1A 295 3.948 a.24.13.1,c.37.1.10 78170,78171 1ji0A 240 3.949 c.37.1.12 71665 1pujA 282 3.976 c.37.1.8 88294 1a7j 290 3.987 1ihuA 589 4.176 c.37.1.10,c.37.1.10 62394,62395 1sxjA 511 4.286 a.80.1.1,c.37.1.20 106081,106082 2ihyA 279 4.331 2fh5B 214 4.376 c.37.1.8 133478 1b0uA 262 4.564 c.37.1.12 32370 1g6oA 330 4.638 c.37.1.11 32430 1tq6A 413 4.724 c.37.1.8 107202 1nsf 273 4.865 2pcjA 224 4.872 1mkyA 439 5.060 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1g8yA 279 5.217 c.37.1.11 32302 1a5t 334 5.320 1xbtA 193 5.372 c.37.1.24,g.39.1.14 115080,115081 1svmA 377 5.654 c.37.1.20 112126 1ye8A 178 6.084 c.37.1.11 123010 2px0A 296 6.279 2bkhA 814 6.930 2c9oA 456 7.130 1rj9A 304 7.164 a.24.13.1,c.37.1.10 97553,97554 1x6vA 630 7.189 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1n4aA 252 7.190 c.92.2.2 85317 1d0yA 761 7.852 b.34.3.1,c.37.1.9 24581,32178 1w9iA 770 7.924 1sgwA 214 7.978 c.37.1.12 105541 1oxsC 353 8.513 b.40.6.3,c.37.1.12 87519,87520 1tueA 212 8.527 c.37.1.20 107323 2jrnA 163 8.845 1j8yF 297 8.985 a.24.13.1,c.37.1.10 62747,62748 2akaA 776 9.037 1xewX 182 9.060 c.37.1.12 115235 2v26A 784 9.087 2r2aA 199 9.306 1lvk 762 9.390 1in6A 334 9.429 a.4.5.11,c.37.1.20 62601,62602 1knxA 312 10.03 c.98.2.1,c.91.1.2 77459,77460 1a5tA 334 10.22 a.80.1.1,c.37.1.20 18450,32423 2chgA 226 12.04 1sxjE 354 13.76 a.80.1.1,c.37.1.20 106089,106090 1n25A 368 13.91 c.37.1.20 85264 1oxxK 353 14.18 b.40.6.3,c.37.1.12 93715,93716 1w7jA 795 14.89 b.34.3.1,c.37.1.9 120688,120689 1us8A 147 16.71 c.37.1.12 99859 1gl6A 436 17.63 c.37.1.11 70259 1d6jA 211 18.52 c.37.1.4 31940 1mvwA 840 18.81 i.15.1.1 79523 3b9pA 297 19.13 1u0jA 267 19.41 c.37.1.20 107546 2hhjA 267 19.46 c.60.1.1 136497 2r6fA 972 19.53 2akaB 299 19.58 c.37.1.8 126914 2dr3A 247 20.11 1w5tA 412 20.51 a.4.5.11,c.37.1.20 114255,114256 2h17A 181 22.81 2nq2C 253 23.11 1xwiA 322 23.21 1f6bA 198 23.49 c.37.1.8 64986 1ewqA 765 23.70 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 3bosA 242 23.85 1g3qA 237 23.97 c.37.1.10 60237 2h57A 190 24.35 1mwmA 320 24.42 c.55.1.1,c.55.1.1 79580,79581 1t9hA 307 25.51 b.40.4.5,c.37.1.8 112358,112359 2cvhA 220 26.39 2pjzA 263 26.72 1yqtA 538 27.46 1d2nA 272 27.80 c.37.1.20 32428 2gdjA 264 28.40 c.37.1.11 135018 1lv7A 257 29.10 c.37.1.20 78232 2gxaA 274 30.36 3cox 507 32.31 1f2tA 149 33.67 c.37.1.12 32373 2qm8A 337 34.23 2iutA 574 34.57 1cr1A 296 35.04 c.37.1.11 32286 7a3hA 303 36.25 c.1.8.3 28817 1jbkA 195 37.84 c.37.1.20 71631 1cp2A 269 39.88 c.37.1.10 32269 1jx2B 315 39.90 c.37.1.8 67404 1ycdA 243 40.86 1w36D 608 41.28 c.37.1.19,c.37.1.19 114128,114129 1h65A 270 41.65 c.37.1.8 65640 2yv5A 302 42.87 1bifA 469 43.53 c.37.1.7,c.60.1.4 31961,34003 1g55A 343 43.59 c.66.1.26 34247 1tca 317 46.99 1ko7A 314 47.10 c.98.2.1,c.91.1.2 72797,72798 1b5tA 275 47.20 c.1.23.1 29676 2qm0A 275 47.42 2g6bA 180 48.32 c.37.1.8 134701 1wywA 230 49.24 2a5yB 549 50.38 1g291 372 55.78 1wcv1 257 56.05 1qhlA 227 58.42 c.37.1.12 32382 1fj2A 232 60.15 c.69.1.14 34720 2fnaA 357 66.69 a.4.5.11,c.37.1.20 133809,133810 3c5cA 187 66.76 1efdN 266 69.13 c.92.2.1 35597 2phzA 311 72.02 5nul 138 72.80 2qmoA 220 72.90 2r7aA 256 75.96 2q8pA 260 76.00 1lw7A 365 76.03 c.26.1.3,c.37.1.1 74295,74296 1zj6A 187 76.89 c.37.1.8 125145 2z1aA 552 77.28 5nulA 138 79.91 c.23.5.1 31191 1ofuA 320 83.12 c.32.1.1,d.79.2.1 86972,86973 3bs4A 260 84.69 2b8wA 328 86.06 1fnnA 389 86.18 a.4.5.11,c.37.1.20 16129,32426 1ny6A 267 86.34 c.37.1.20 92321 2oblA 347 86.45 2p65A 187 86.79 1gg4A 452 87.40 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1pfkA 320 89.98 c.89.1.1 35575