# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j41A 207 3.45e-08 2qorA 204 3.57e-08 1znwA 207 4.85e-08 c.37.1.1 125412 1z6gA 218 6.00e-08 1p5zB 263 2.08e-07 c.37.1.1 87815 2ccjA 205 2.14e-07 4tmkA 213 2.86e-07 c.37.1.1 31930 1z8fA 228 3.85e-07 2pbrA 195 4.38e-07 1kjwA 295 9.90e-07 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 6.57e-06 1gtvA 214 8.35e-06 c.37.1.1 70537 1t0hB 224 2.32e-05 c.37.1.1 106208 2z0hA 197 2.51e-05 1t3lA 337 2.73e-05 b.34.2.1,c.37.1.1 106358,106359 2vp4A 230 5.04e-05 1ex7A 186 5.06e-05 c.37.1.1 59537 1p6xA 334 5.53e-05 c.37.1.1 94195 1ukzA 203 5.64e-05 c.37.1.1 31840 1qhiA 366 6.66e-05 c.37.1.1 31860 2bwjA 199 8.31e-05 1s4qA 228 0.000118 c.37.1.1 98507 1e2kA 331 0.000142 c.37.1.1 31854 1zm7A 230 0.000161 2axpA 173 0.000210 c.37.1.1 127497 2cdnA 201 0.000408 c.37.1.1 130289 1ki9A 192 0.000513 c.37.1.1 84404 1oe0A 230 0.000624 c.37.1.1 92788 2c95A 196 0.000705 1of1A 376 0.000733 c.37.1.1 103924 1ukz 203 0.001141 1y63A 184 0.001201 c.37.1.1 116494 1qhxA 178 0.002392 c.37.1.3 31936 2qgnA 322 0.002711 1knqA 175 0.002848 c.37.1.17 72786 3tmkA 216 0.003557 c.37.1.1 31920 1ckeA 227 0.003912 c.37.1.1 31846 1xrjA 261 0.003974 c.37.1.6 122256 1kgdA 180 0.005116 c.37.1.1 68582 1qf9A 194 0.006468 c.37.1.1 31848 2f6rA 281 0.006562 1uj2A 252 0.008137 c.37.1.6 99452 1e4yA 214 0.00998 c.37.1.1,g.41.2.1 31901,45181 1kdoA 227 0.01023 c.37.1.1 68478 1gky 187 0.01065 1vhtA 218 0.01304 c.37.1.1 100700 1nksA 194 0.01703 c.37.1.1 31886 3c8uA 208 0.02202 1zd8A 227 0.02278 2an9A 207 0.02379 c.37.1.1 127037 3crrA 323 0.03356 2eu8A 216 0.05179 1ak2A 233 0.05639 c.37.1.1,g.41.2.1 31894,45195 1khtA 192 0.06848 c.37.1.1 84401 2ax4A 198 0.07532 2g1kA 176 0.09190 c.37.1.2 134519 2ze7A 253 0.09269 2iyvA 184 0.09506 c.37.1.2 137812 2rgxA 206 0.1026 1e6cA 173 0.1079 c.37.1.2 59296 1nn5A 215 0.1146 c.37.1.1 85892 1n3bA 216 0.1206 c.37.1.1 79959 1ltqA 301 0.1743 c.108.1.9,c.37.1.1 78208,78209 1jjvA 206 0.1782 c.37.1.1 71698 2rhmA 193 0.1820 1p3jA 217 0.2133 c.37.1.1,g.41.2.1 94022,94023 2ak3A 226 0.2179 c.37.1.1,g.41.2.1 31892,45193 1akyA 220 0.2313 c.37.1.1,g.41.2.1 31896,45197 1zuhA 168 0.2461 2p67A 341 0.2936 1viaA 175 0.3042 c.37.1.2 100754 3be4A 217 0.3083 1zinA 217 0.3192 c.37.1.1,g.41.2.1 31915,45178 1rkbA 173 0.3267 c.37.1.1 111854 2qt1A 207 0.3286 1zin 217 0.3328 1s96A 219 0.3351 c.37.1.1 98740 2bdtA 189 0.4190 c.37.1.25 128344 1m7gA 211 0.4506 c.37.1.4 78724 2yvuA 186 0.5910 2f1rA 171 0.7987 1kagA 173 0.8319 c.37.1.2 72249 2pezA 179 0.9099 1xjcA 169 0.9949 c.37.1.10 115387 2orwA 184 1.035 1esmA 316 1.230 c.37.1.6 31953 2r44A 331 1.471 2ga8A 359 1.493 1sq5A 308 1.595 c.37.1.6 105882 1np6A 174 1.868 c.37.1.10 85954 2pt5A 168 1.937 1ly1A 181 2.005 c.37.1.1 74334 2eyuA 261 2.219 1xx6A 191 2.349 c.37.1.24,g.39.1.14 116139,116140 1a7jA 290 2.408 c.37.1.6 31952 1nlfA 279 2.697 c.37.1.11 85850 1dekA 241 3.142 c.37.1.1 31842 2og2A 359 3.178 1a7j 290 3.216 1e9rA 437 3.678 c.37.1.11 64827 2p5tB 253 4.259 2vhjA 331 4.357 1gvnB 287 4.704 c.37.1.21 76354 1w44A 331 4.710 c.37.1.11 114147 3b9qA 302 4.899 2oap1 511 5.048 1tq4A 413 5.050 c.37.1.8 107201 2bbsA 290 5.246 1zu4A 320 5.347 1vmaA 306 5.688 a.24.13.1,c.37.1.10 108887,108888 2k3aA 155 6.545 2qy9A 309 6.813 1g8fA 511 7.444 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1nijA 318 7.464 c.37.1.10,d.237.1.1 85741,85742 1pujA 282 7.696 c.37.1.8 88294 2d2eA 250 7.732 2cbzA 237 7.847 2grjA 192 8.583 1l2tA 235 8.674 c.37.1.12 73514 2px0A 296 8.832 2ixeA 271 9.143 1sxjA 511 9.152 a.80.1.1,c.37.1.20 106081,106082 1vplA 256 10.46 c.37.1.12 113966 2ff7A 247 10.46 c.37.1.12 133377 1ls1A 295 10.86 a.24.13.1,c.37.1.10 78170,78171 1j8mF 297 11.02 a.24.13.1,c.37.1.10 62742,62743 1xmiA 291 11.73 c.37.1.12 115489 1tq6A 413 11.83 c.37.1.8 107202 2pzeA 229 11.90 2hf9A 226 12.05 3b9pA 297 12.33 1njgA 250 13.24 c.37.1.20 85785 1x6vA 630 13.29 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pmkA 243 13.30 1nsf 273 13.46 1g8yA 279 13.88 c.37.1.11 32302 1a5t 334 14.07 1htwA 158 14.73 c.37.1.18 71083 1rz3A 201 16.26 c.37.1.6 98132 1sxjC 340 16.77 a.80.1.1,c.37.1.20 106085,106086 1b0uA 262 17.08 c.37.1.12 32370 1z47A 355 17.52 1rj9A 304 18.28 a.24.13.1,c.37.1.10 97553,97554 1mkyA 439 19.18 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1r0wA 286 19.19 c.37.1.12 96754 2chgA 226 19.68 2gzaA 361 20.69 1xbtA 193 20.88 c.37.1.24,g.39.1.14 115080,115081 1in4A 334 21.25 a.4.5.11,c.37.1.20 62597,62598 2fh5B 214 21.30 c.37.1.8 133478 2qi9C 249 21.45 1ihuA 589 21.84 c.37.1.10,c.37.1.10 62394,62395 1lw7A 365 22.22 c.26.1.3,c.37.1.1 74295,74296 2pcjA 224 22.60 2jrnA 163 23.96 1n2zA 245 24.47 c.92.2.2 79865 1svmA 377 24.71 c.37.1.20 112126 1knxA 312 25.39 c.98.2.1,c.91.1.2 77459,77460 1ji0A 240 25.90 c.37.1.12 71665 2c9oA 456 26.91 2pt7A 330 27.76 1ye8A 178 28.37 c.37.1.11 123010 1oxsC 353 28.91 b.40.6.3,c.37.1.12 87519,87520 1g6hA 257 29.31 c.37.1.12 60318 1sxjE 354 30.09 a.80.1.1,c.37.1.20 106089,106090 2it1A 362 31.37 1w9iA 770 32.26 1n4aA 252 32.26 c.92.2.2 85317 2r2aA 199 32.56 1lv7A 257 32.80 c.37.1.20 78232 1xwiA 322 32.95 2ihyA 279 32.96 1j8yF 297 33.98 a.24.13.1,c.37.1.10 62747,62748 1w5tA 412 34.44 a.4.5.11,c.37.1.20 114255,114256 1d0yA 761 35.45 b.34.3.1,c.37.1.9 24581,32178 1tueA 212 36.61 c.37.1.20 107323 1a5tA 334 37.02 a.80.1.1,c.37.1.20 18450,32423 1oxxK 353 38.09 b.40.6.3,c.37.1.12 93715,93716 1in6A 334 39.74 a.4.5.11,c.37.1.20 62601,62602 1d2nA 272 39.98 c.37.1.20 32428 2v26A 784 43.10 3cox 507 43.40 7a3hA 303 43.78 c.1.8.3 28817 2akaA 776 44.92 1lvk 762 45.33 1gl6A 436 45.75 c.37.1.11 70259 1g6oA 330 47.70 c.37.1.11 32430 1mvwA 840 48.04 i.15.1.1 79523 1f6bA 198 48.22 c.37.1.8 64986 1g55A 343 49.85 c.66.1.26 34247 1w7jA 795 52.23 b.34.3.1,c.37.1.9 120688,120689 1yrbA 262 52.84 c.37.1.10 123915 2qm0A 275 53.63 2akaB 299 56.64 c.37.1.8 126914 1efdN 266 56.98 c.92.2.1 35597 1ewqA 765 58.40 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 3bosA 242 59.53 1sgwA 214 62.90 c.37.1.12 105541 1e79D 482 65.77 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1f2tA 149 66.02 c.37.1.12 32373 1us8A 147 67.45 c.37.1.12 99859 2b8wA 328 67.82 2h17A 181 70.42 1ko7A 314 72.61 c.98.2.1,c.91.1.2 72797,72798 1b5tA 275 72.84 c.1.23.1 29676 1n25A 368 74.26 c.37.1.20 85264 2bkhA 814 74.57 2qm8A 337 76.69 2gxaA 274 77.47 2iutA 574 78.60 2a5yB 549 79.33 1qhlA 227 81.57 c.37.1.12 32382 2cvhA 220 85.32 2yv5A 302 86.52 1d6jA 211 87.75 c.37.1.4 31940 2r6fA 972 87.91 1qopA 268 89.35 c.1.2.4 28570