# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 3.83e-11 1z6gA 218 5.22e-11 2j41A 207 6.60e-11 1znwA 207 7.83e-11 c.37.1.1 125412 1p5zB 263 2.92e-10 c.37.1.1 87815 2pbrA 195 5.85e-10 2ccjA 205 6.19e-10 4tmkA 213 8.41e-10 c.37.1.1 31930 1z8fA 228 1.07e-09 1kjwA 295 8.39e-09 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 2.93e-08 1gtvA 214 3.65e-08 c.37.1.1 70537 2z0hA 197 1.77e-07 1t0hB 224 1.92e-07 c.37.1.1 106208 1t3lA 337 3.30e-07 b.34.2.1,c.37.1.1 106358,106359 1ex7A 186 4.42e-07 c.37.1.1 59537 2vp4A 230 5.07e-07 2bwjA 199 6.07e-07 1ukzA 203 6.93e-07 c.37.1.1 31840 1qhiA 366 9.65e-07 c.37.1.1 31860 1p6xA 334 1.16e-06 c.37.1.1 94195 1s4qA 228 1.73e-06 c.37.1.1 98507 1zm7A 230 2.45e-06 2axpA 173 3.16e-06 c.37.1.1 127497 1e2kA 331 3.34e-06 c.37.1.1 31854 2c95A 196 4.25e-06 2cdnA 201 5.27e-06 c.37.1.1 130289 1ki9A 192 6.07e-06 c.37.1.1 84404 1of1A 376 9.58e-06 c.37.1.1 103924 1oe0A 230 1.00e-05 c.37.1.1 92788 1ukz 203 1.32e-05 1qhxA 178 2.34e-05 c.37.1.3 31936 1y63A 184 3.31e-05 c.37.1.1 116494 1ckeA 227 4.80e-05 c.37.1.1 31846 1knqA 175 5.30e-05 c.37.1.17 72786 2qgnA 322 5.34e-05 1xrjA 261 8.02e-05 c.37.1.6 122256 1qf9A 194 8.48e-05 c.37.1.1 31848 1vhtA 218 0.000136 c.37.1.1 100700 1uj2A 252 0.000182 c.37.1.6 99452 1kgdA 180 0.000185 c.37.1.1 68582 3tmkA 216 0.000213 c.37.1.1 31920 1e4yA 214 0.000218 c.37.1.1,g.41.2.1 31901,45181 1gky 187 0.000371 2f6rA 281 0.000483 1kdoA 227 0.000499 c.37.1.1 68478 2an9A 207 0.000544 c.37.1.1 127037 1zd8A 227 0.000814 1nksA 194 0.000818 c.37.1.1 31886 3crrA 323 0.001100 3c8uA 208 0.001116 1e6cA 173 0.002251 c.37.1.2 59296 2eu8A 216 0.002787 1zin 217 0.003404 2g1kA 176 0.003481 c.37.1.2 134519 2ze7A 253 0.004375 2qt1A 207 0.004453 2ax4A 198 0.004472 2ak3A 226 0.004673 c.37.1.1,g.41.2.1 31892,45193 1nn5A 215 0.004781 c.37.1.1 85892 1ak2A 233 0.004796 c.37.1.1,g.41.2.1 31894,45195 2rgxA 206 0.004917 1khtA 192 0.005005 c.37.1.1 84401 2iyvA 184 0.006209 c.37.1.2 137812 1p3jA 217 0.006490 c.37.1.1,g.41.2.1 94022,94023 1n3bA 216 0.006639 c.37.1.1 79959 1s96A 219 0.01017 c.37.1.1 98740 1ltqA 301 0.01143 c.108.1.9,c.37.1.1 78208,78209 1jjvA 206 0.01236 c.37.1.1 71698 1akyA 220 0.01302 c.37.1.1,g.41.2.1 31896,45197 2rhmA 193 0.01508 3be4A 217 0.01741 1zinA 217 0.01744 c.37.1.1,g.41.2.1 31915,45178 2bdtA 189 0.02011 c.37.1.25 128344 1rkbA 173 0.02499 c.37.1.1 111854 1zuhA 168 0.03168 1viaA 175 0.03216 c.37.1.2 100754 2p67A 341 0.04243 1m7gA 211 0.04496 c.37.1.4 78724 2yvuA 186 0.05050 2pezA 179 0.06265 2f1rA 171 0.06870 2orwA 184 0.07253 1xjcA 169 0.07835 c.37.1.10 115387 1ly1A 181 0.07906 c.37.1.1 74334 1kagA 173 0.08533 c.37.1.2 72249 2ga8A 359 0.1753 1np6A 174 0.1854 c.37.1.10 85954 1xx6A 191 0.2188 c.37.1.24,g.39.1.14 116139,116140 2pt5A 168 0.2203 1esmA 316 0.2286 c.37.1.6 31953 2r44A 331 0.2586 1sq5A 308 0.2698 c.37.1.6 105882 1nlfA 279 0.3431 c.37.1.11 85850 2d2eA 250 0.3572 1e9rA 437 0.3886 c.37.1.11 64827 2eyuA 261 0.3953 2bbsA 290 0.4290 1a7jA 290 0.4666 c.37.1.6 31952 1dekA 241 0.5574 c.37.1.1 31842 1vplA 256 0.6745 c.37.1.12 113966 1l2tA 235 0.7082 c.37.1.12 73514 2cbzA 237 0.7171 1nijA 318 0.7183 c.37.1.10,d.237.1.1 85741,85742 2oap1 511 0.7791 2vhjA 331 0.7832 1z47A 355 0.8426 1r0wA 286 0.8442 c.37.1.12 96754 1xmiA 291 0.8929 c.37.1.12 115489 2hf9A 226 0.9047 2og2A 359 0.9661 3b9qA 302 0.9830 1g8fA 511 1.034 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1w44A 331 1.044 c.37.1.11 114147 2k3aA 155 1.233 1a7j 290 1.276 2grjA 192 1.318 1gvnB 287 1.329 c.37.1.21 76354 2pzeA 229 1.345 1zu4A 320 1.418 2ixeA 271 1.427 1g6hA 257 1.603 c.37.1.12 60318 1tq4A 413 1.640 c.37.1.8 107201 2ff7A 247 1.647 c.37.1.12 133377 1rz3A 201 1.660 c.37.1.6 98132 2p5tB 253 1.671 2it1A 362 1.763 2qi9C 249 1.823 2pmkA 243 1.862 1in4A 334 1.884 a.4.5.11,c.37.1.20 62597,62598 2ihyA 279 1.914 1ji0A 240 1.917 c.37.1.12 71665 2gzaA 361 1.982 1sxjC 340 1.986 a.80.1.1,c.37.1.20 106085,106086 1njgA 250 2.001 c.37.1.20 85785 1htwA 158 2.162 c.37.1.18 71083 2qy9A 309 2.173 1g8yA 279 2.220 c.37.1.11 32302 2pcjA 224 2.225 1pujA 282 2.285 c.37.1.8 88294 1oxsC 353 2.579 b.40.6.3,c.37.1.12 87519,87520 1x6vA 630 2.714 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1vmaA 306 2.781 a.24.13.1,c.37.1.10 108887,108888 1sxjA 511 2.810 a.80.1.1,c.37.1.20 106081,106082 1n4aA 252 2.877 c.92.2.2 85317 1xbtA 193 3.045 c.37.1.24,g.39.1.14 115080,115081 1n2zA 245 3.075 c.92.2.2 79865 1j8mF 297 3.351 a.24.13.1,c.37.1.10 62742,62743 1g6oA 330 3.371 c.37.1.11 32430 1ihuA 589 3.595 c.37.1.10,c.37.1.10 62394,62395 1b0uA 262 3.800 c.37.1.12 32370 1w9iA 770 3.810 1oxxK 353 3.883 b.40.6.3,c.37.1.12 93715,93716 1a5t 334 3.922 2fh5B 214 4.105 c.37.1.8 133478 1nsf 273 4.120 1mkyA 439 4.503 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1sgwA 214 4.857 c.37.1.12 105541 2jrnA 163 4.863 1ls1A 295 4.883 a.24.13.1,c.37.1.10 78170,78171 1d0yA 761 5.025 b.34.3.1,c.37.1.9 24581,32178 2v26A 784 5.068 1ye8A 178 5.562 c.37.1.11 123010 2pt7A 330 5.600 1lvk 762 5.643 1gl6A 436 5.756 c.37.1.11 70259 1knxA 312 5.844 c.98.2.1,c.91.1.2 77459,77460 2px0A 296 6.071 2bkhA 814 6.570 2r2aA 199 6.756 1us8A 147 6.845 c.37.1.12 99859 1rj9A 304 6.949 a.24.13.1,c.37.1.10 97553,97554 1svmA 377 7.293 c.37.1.20 112126 2chgA 226 7.349 2akaA 776 7.472 1tq6A 413 7.736 c.37.1.8 107202 2c9oA 456 7.812 1mvwA 840 7.827 i.15.1.1 79523 1a5tA 334 8.362 a.80.1.1,c.37.1.20 18450,32423 1w7jA 795 8.615 b.34.3.1,c.37.1.9 120688,120689 1sxjE 354 9.015 a.80.1.1,c.37.1.20 106089,106090 1tueA 212 9.887 c.37.1.20 107323 1in6A 334 10.77 a.4.5.11,c.37.1.20 62601,62602 2nq2C 253 10.87 1ewqA 765 11.04 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2dr3A 247 11.33 1xewX 182 11.43 c.37.1.12 115235 1f2tA 149 12.05 c.37.1.12 32373 1t9hA 307 12.43 b.40.4.5,c.37.1.8 112358,112359 1w5tA 412 13.13 a.4.5.11,c.37.1.20 114255,114256 1g55A 343 13.64 c.66.1.26 34247 1yqtA 538 13.96 3bosA 242 14.43 3b9pA 297 14.84 2r6fA 972 14.98 1n25A 368 15.24 c.37.1.20 85264 1d6jA 211 15.27 c.37.1.4 31940 1j8yF 297 15.67 a.24.13.1,c.37.1.10 62747,62748 2pjzA 263 15.87 1lw7A 365 17.34 c.26.1.3,c.37.1.1 74295,74296 1qopA 268 18.46 c.1.2.4 28570 2cvhA 220 18.59 2akaB 299 18.84 c.37.1.8 126914 1efdN 266 19.23 c.92.2.1 35597 2qm8A 337 19.43 1d2nA 272 19.65 c.37.1.20 32428 3cox 507 20.28 2z83A 459 21.00 2h17A 181 21.46 1yrbA 262 21.90 c.37.1.10 123915 1g3qA 237 23.13 c.37.1.10 60237 1ko7A 314 23.82 c.98.2.1,c.91.1.2 72797,72798 1qhlA 227 24.08 c.37.1.12 32382 2yv5A 302 24.29 1bifA 469 24.65 c.37.1.7,c.60.1.4 31961,34003 1cr1A 296 25.41 c.37.1.11 32286 1wywA 230 25.99 2qm0A 275 26.53 1cp2A 269 26.54 c.37.1.10 32269 1b5tA 275 27.65 c.1.23.1 29676 1g291 372 27.69 2gxaA 274 28.08 2reb 352 28.49 1jbkA 195 28.76 c.37.1.20 71631 1u0jA 267 29.56 c.37.1.20 107546 1lv7A 257 29.74 c.37.1.20 78232 7a3hA 303 31.96 c.1.8.3 28817 1f6bA 198 32.13 c.37.1.8 64986 3bh0A 315 32.69 2r7aA 256 33.94 1tca 317 34.84 2gdjA 264 35.05 c.37.1.11 135018 2iutA 574 36.62 1ycdA 243 40.01 1xwiA 322 40.60 2h57A 190 41.05 1jx2B 315 43.14 c.37.1.8 67404 1h65A 270 44.27 c.37.1.8 65640 1odfA 290 46.34 c.37.1.6 92782 1wcv1 257 46.48 2f7lA 455 46.51 2a5yB 549 47.45 2qmoA 220 48.15 2g6bA 180 51.69 c.37.1.8 134701 5nul 138 51.74 1mwmA 320 53.01 c.55.1.1,c.55.1.1 79580,79581 2rebA 352 53.10 c.37.1.11,d.48.1.1 32282,38767 2phzA 311 55.79 2oblA 347 56.67 1s2oA 244 59.49 c.108.1.10 118846 2b8wA 328 60.13 2p65A 187 60.22 1fj2A 232 60.23 c.69.1.14 34720 1ny6A 267 62.44 c.37.1.20 92321 1srvA 145 67.31 c.8.5.1 30817 3bs4A 260 67.58 1ofuA 320 71.45 c.32.1.1,d.79.2.1 86972,86973 1fnnA 389 74.51 a.4.5.11,c.37.1.20 16129,32426 1eg7A 557 76.69 c.37.1.10 32241 2a9iA 113 79.62 1kid 203 79.79 1i52A 236 79.92 c.68.1.13 61767 1kidA 203 81.42 c.8.5.1 30771 1wz8A 264 82.21 c.14.1.3 121483 2b8tA 223 84.18 c.37.1.24,g.39.1.14 128109,128110 1t2aA 375 86.40 c.2.1.2 99078 2q8pA 260 88.34