# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 5.27e-08 1znwA 207 6.02e-08 c.37.1.1 125412 1z6gA 218 1.45e-07 2j41A 207 1.84e-07 1p5zB 263 2.32e-07 c.37.1.1 87815 2ccjA 205 9.11e-07 2pbrA 195 1.02e-06 1z8fA 228 1.18e-06 1kjwA 295 1.61e-06 b.34.2.1,c.37.1.1 68643,68644 4tmkA 213 3.79e-06 c.37.1.1 31930 1gtvA 214 2.26e-05 c.37.1.1 70537 1ukzA 203 3.39e-05 c.37.1.1 31840 1t3lA 337 6.78e-05 b.34.2.1,c.37.1.1 106358,106359 2plrA 213 9.19e-05 1s4qA 228 9.65e-05 c.37.1.1 98507 1ex7A 186 0.000109 c.37.1.1 59537 1t0hB 224 0.000122 c.37.1.1 106208 2z0hA 197 0.000163 1qhiA 366 0.000211 c.37.1.1 31860 2bwjA 199 0.000244 2vp4A 230 0.000290 2axpA 173 0.000357 c.37.1.1 127497 1p6xA 334 0.000418 c.37.1.1 94195 1e2kA 331 0.000702 c.37.1.1 31854 2cdnA 201 0.000764 c.37.1.1 130289 1ukz 203 0.001091 1zm7A 230 0.001234 1y63A 184 0.001391 c.37.1.1 116494 1oe0A 230 0.001496 c.37.1.1 92788 2c95A 196 0.001628 2f6rA 281 0.002108 1ki9A 192 0.002125 c.37.1.1 84404 1of1A 376 0.002702 c.37.1.1 103924 1ckeA 227 0.003444 c.37.1.1 31846 1xrjA 261 0.003666 c.37.1.6 122256 1qhxA 178 0.004069 c.37.1.3 31936 1knqA 175 0.004163 c.37.1.17 72786 1uj2A 252 0.004894 c.37.1.6 99452 1qf9A 194 0.005559 c.37.1.1 31848 2qgnA 322 0.006478 3tmkA 216 0.006733 c.37.1.1 31920 2an9A 207 0.008074 c.37.1.1 127037 1kdoA 227 0.01013 c.37.1.1 68478 1gky 187 0.01020 1kgdA 180 0.01306 c.37.1.1 68582 3c8uA 208 0.01374 3crrA 323 0.01492 2ax4A 198 0.02378 2iyvA 184 0.02445 c.37.1.2 137812 1vhtA 218 0.03451 c.37.1.1 100700 1e4yA 214 0.03625 c.37.1.1,g.41.2.1 31901,45181 2g1kA 176 0.04069 c.37.1.2 134519 1n3bA 216 0.04342 c.37.1.1 79959 2bdtA 189 0.06125 c.37.1.25 128344 1nksA 194 0.07178 c.37.1.1 31886 1m7gA 211 0.08509 c.37.1.4 78724 1viaA 175 0.1001 c.37.1.2 100754 2eu8A 216 0.1048 1e6cA 173 0.1140 c.37.1.2 59296 1zd8A 227 0.1469 2rhmA 193 0.1517 2yvuA 186 0.1679 1ak2A 233 0.1753 c.37.1.1,g.41.2.1 31894,45195 1kagA 173 0.2105 c.37.1.2 72249 1s96A 219 0.2183 c.37.1.1 98740 2rgxA 206 0.2315 2pt5A 168 0.2359 3be4A 217 0.2709 2pezA 179 0.2732 1p3jA 217 0.2922 c.37.1.1,g.41.2.1 94022,94023 1rkbA 173 0.3343 c.37.1.1 111854 1zuhA 168 0.3648 1akyA 220 0.3733 c.37.1.1,g.41.2.1 31896,45197 1khtA 192 0.4170 c.37.1.1 84401 1nn5A 215 0.4506 c.37.1.1 85892 1jjvA 206 0.6121 c.37.1.1 71698 1sq5A 308 0.6504 c.37.1.6 105882 1ltqA 301 0.7641 c.108.1.9,c.37.1.1 78208,78209 2qt1A 207 0.7847 2orwA 184 0.8042 1zinA 217 0.8053 c.37.1.1,g.41.2.1 31915,45178 2ze7A 253 0.8350 1esmA 316 0.9637 c.37.1.6 31953 2ak3A 226 1.026 c.37.1.1,g.41.2.1 31892,45193 1zin 217 1.245 2ga8A 359 1.909 2p67A 341 2.233 1xx6A 191 2.294 c.37.1.24,g.39.1.14 116139,116140 2gzaA 361 2.624 2eyuA 261 3.041 2og2A 359 3.512 1tq6A 413 3.608 c.37.1.8 107202 2p5tB 253 3.844 2f1rA 171 4.119 1a7j 290 4.676 2px0A 296 4.760 1a7jA 290 5.073 c.37.1.6 31952 1vmaA 306 5.217 a.24.13.1,c.37.1.10 108887,108888 1nijA 318 5.237 c.37.1.10,d.237.1.1 85741,85742 1xjcA 169 6.326 c.37.1.10 115387 1ly1A 181 6.569 c.37.1.1 74334 3b9qA 302 6.776 1nsf 273 7.169 1e9rA 437 7.449 c.37.1.11 64827 1nlfA 279 7.666 c.37.1.11 85850 2grjA 192 8.017 1r0wA 286 8.179 c.37.1.12 96754 1gvnB 287 8.571 c.37.1.21 76354 2qy9A 309 9.559 1dekA 241 9.97 c.37.1.1 31842 1g8yA 279 10.70 c.37.1.11 32302 1ls1A 295 11.36 a.24.13.1,c.37.1.10 78170,78171 1w44A 331 11.83 c.37.1.11 114147 1rj9A 304 11.90 a.24.13.1,c.37.1.10 97553,97554 1j8mF 297 12.81 a.24.13.1,c.37.1.10 62742,62743 1xbtA 193 12.93 c.37.1.24,g.39.1.14 115080,115081 1sxjA 511 12.97 a.80.1.1,c.37.1.20 106081,106082 1zu4A 320 13.65 2bbsA 290 14.33 1pujA 282 14.66 c.37.1.8 88294 1mkyA 439 14.68 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2fh5B 214 14.99 c.37.1.8 133478 2vhjA 331 15.00 1lw7A 365 15.74 c.26.1.3,c.37.1.1 74295,74296 2yvaA 196 15.78 1w5tA 412 15.97 a.4.5.11,c.37.1.20 114255,114256 1tca 317 17.16 1xmiA 291 17.91 c.37.1.12 115489 1g8fA 511 18.27 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1ihuA 589 18.39 c.37.1.10,c.37.1.10 62394,62395 2pt7A 330 18.50 2i2wA 212 19.26 2b8wA 328 19.81 2hf9A 226 20.49 2chgA 226 20.60 3b9pA 297 24.04 1ji0A 240 24.17 c.37.1.12 71665 2it1A 362 25.24 1g6oA 330 26.90 c.37.1.11 32430 1vplA 256 26.99 c.37.1.12 113966 1x6vA 630 27.01 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2v26A 784 27.37 2r44A 331 27.78 1z47A 355 30.16 1lvk 762 32.15 2z1aA 552 32.33 1rz3A 201 33.47 c.37.1.6 98132 1fj2A 232 33.76 c.69.1.14 34720 1a5t 334 37.87 2k3aA 155 38.15 1t9hA 307 38.39 b.40.4.5,c.37.1.8 112358,112359 2f7lA 455 39.71 2dr3A 247 39.94 2akaA 776 41.51 1t2aA 375 41.59 c.2.1.2 99078 1f6bA 198 42.71 c.37.1.8 64986 1r1dA 247 43.19 c.69.1.29 96813 1d0yA 761 43.20 b.34.3.1,c.37.1.9 24581,32178 1sxjC 340 43.28 a.80.1.1,c.37.1.20 106085,106086 1w9iA 770 43.47 7a3hA 303 44.73 c.1.8.3 28817 1in6A 334 44.82 a.4.5.11,c.37.1.20 62601,62602 1kjqA 391 45.30 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1w7jA 795 46.31 b.34.3.1,c.37.1.9 120688,120689 2cbzA 237 46.68 1g6hA 257 47.38 c.37.1.12 60318 2qi9C 249 48.07 2bkhA 814 48.40 1np6A 174 49.08 c.37.1.10 85954 2jbwA 386 49.43 1b5tA 275 49.92 c.1.23.1 29676 1tq4A 413 51.31 c.37.1.8 107201 1tcaA 317 54.00 c.69.1.17 34726 1yrbA 262 54.54 c.37.1.10 123915 2qgzA 308 56.56 1wqaA 455 56.59 1ofuA 320 57.56 c.32.1.1,d.79.2.1 86972,86973 2a5yB 549 57.64 2oap1 511 58.10 1in4A 334 59.13 a.4.5.11,c.37.1.20 62597,62598 1gt6A 269 59.39 c.69.1.17 76342 1b0uA 262 60.27 c.37.1.12 32370 1bifA 469 61.10 c.37.1.7,c.60.1.4 31961,34003 1tueA 212 61.12 c.37.1.20 107323 1d2nA 272 62.21 c.37.1.20 32428 1r88A 280 63.31 c.69.1.3 97219 2hfkA 319 63.75 1gl6A 436 64.20 c.37.1.11 70259 1tk9A 188 66.95 c.80.1.3 107082 1g3qA 237 68.95 c.37.1.10 60237 2pzeA 229 69.36 1jbkA 195 69.47 c.37.1.20 71631 1edtA 271 70.89 c.1.8.5 28993 1w5fA 353 71.52 c.32.1.1,d.79.2.1 114247,114248 2pcjA 224 71.73 2yv5A 302 72.26 2hhjA 267 74.62 c.60.1.1 136497 2c9oA 456 78.63 2dbqA 334 78.80 2dkaA 544 79.31 1x92A 199 81.14 c.80.1.3 114976 1g38A 393 82.10 c.66.1.27,d.287.1.1 111567,111568 1jx2B 315 82.12 c.37.1.8 67404 1zi8A 236 82.15 1htwA 158 83.02 c.37.1.18 71083 1sgwA 214 83.08 c.37.1.12 105541 2r2aA 199 83.69 1u2eA 289 83.98 2qm0A 275 85.25 1tuoA 464 85.50 2gjcA 326 85.54 c.3.1.6 135280 1h65A 270 86.59 c.37.1.8 65640 2ihyA 279 87.05 3bs4A 260 87.36 1ycdA 243 87.97 1ye8A 178 88.13 c.37.1.11 123010 2r6fA 972 88.35 2ff7A 247 88.81 c.37.1.12 133377 1njgA 250 89.80 c.37.1.20 85785