# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ccjA 205 0.6899 2qorA 204 0.7255 2pbrA 195 0.7598 1xrjA 261 0.7885 c.37.1.6 122256 1p5zB 263 1.068 c.37.1.1 87815 2plrA 213 1.117 1z6gA 218 1.352 1uj2A 252 1.386 c.37.1.6 99452 1qf9A 194 1.550 c.37.1.1 31848 1ukzA 203 1.865 c.37.1.1 31840 4tmkA 213 2.110 c.37.1.1 31930 1znwA 207 3.630 c.37.1.1 125412 1z8fA 228 3.894 2an9A 207 4.261 c.37.1.1 127037 1ckeA 227 4.297 c.37.1.1 31846 2j41A 207 4.379 1kdoA 227 4.557 c.37.1.1 68478 1ex7A 186 4.583 c.37.1.1 59537 1oe0A 230 5.634 c.37.1.1 92788 1ukz 203 5.806 2z0hA 197 5.849 2bwjA 199 5.906 2yvuA 186 7.902 2cdnA 201 8.355 c.37.1.1 130289 2axpA 173 8.969 c.37.1.1 127497 1qhxA 178 9.084 c.37.1.3 31936 2bdtA 189 9.710 c.37.1.25 128344 1ak2A 233 9.903 c.37.1.1,g.41.2.1 31894,45195 3c8uA 208 10.31 1ki9A 192 11.17 c.37.1.1 84404 1s96A 219 11.50 c.37.1.1 98740 1knqA 175 12.27 c.37.1.17 72786 2f6rA 281 12.51 2c95A 196 13.05 1gky 187 13.23 2vp4A 230 14.63 1y63A 184 14.66 c.37.1.1 116494 2pt5A 168 15.01 2rgxA 206 15.57 1t3lA 337 15.71 b.34.2.1,c.37.1.1 106358,106359 2ak3A 226 16.33 c.37.1.1,g.41.2.1 31892,45193 1t0hB 224 16.34 c.37.1.1 106208 2qt1A 207 16.81 1e6cA 173 16.84 c.37.1.2 59296 2eu8A 216 16.88 1kjwA 295 16.98 b.34.2.1,c.37.1.1 68643,68644 2pezA 179 17.21 1zm7A 230 17.47 1ny6A 267 17.53 c.37.1.20 92321 2ax4A 198 18.00 1p6xA 334 19.80 c.37.1.1 94195 1rkbA 173 20.72 c.37.1.1 111854 1p3jA 217 22.27 c.37.1.1,g.41.2.1 94022,94023 1xmiA 291 24.91 c.37.1.12 115489 1nn5A 215 27.17 c.37.1.1 85892 1m7gA 211 27.80 c.37.1.4 78724 1zd8A 227 28.71 1zinA 217 28.81 c.37.1.1,g.41.2.1 31915,45178 2bbsA 290 28.90 1vhtA 218 29.96 c.37.1.1 100700 1s4qA 228 32.24 c.37.1.1 98507 1gtvA 214 33.42 c.37.1.1 70537 1jjvA 206 34.83 c.37.1.1 71698 1n3bA 216 36.67 c.37.1.1 79959 1e4yA 214 36.85 c.37.1.1,g.41.2.1 31901,45181 2o14A 375 47.19 1d2nA 272 49.38 c.37.1.20 32428 1akyA 220 49.60 c.37.1.1,g.41.2.1 31896,45197 1khtA 192 51.21 c.37.1.1 84401 1zin 217 52.73 2bmeA 186 53.81 c.37.1.8 128790 2qgnA 322 54.16 1viaA 175 54.39 c.37.1.2 100754 2iyvA 184 59.10 c.37.1.2 137812 1t6cA 315 59.26 c.55.1.8,c.55.1.8 106558,106559 1kgdA 180 59.94 c.37.1.1 68582 2hf2A 283 60.56 1of1A 376 61.53 c.37.1.1 103924 2rhmA 193 61.67 3tmkA 216 62.75 c.37.1.1 31920 2ga8A 359 63.08 2fuvA 549 63.85 1xwiA 322 64.04 1kpgA 287 65.24 c.66.1.18 68735 2g1kA 176 66.87 c.37.1.2 134519 1nksA 194 68.79 c.37.1.1 31886 1nsf 273 68.98 2c9oA 456 72.13 2akaA 776 74.41 1sxjC 340 74.57 a.80.1.1,c.37.1.20 106085,106086 1kagA 173 75.38 c.37.1.2 72249 1e2kA 331 75.99 c.37.1.1 31854 1r0wA 286 76.98 c.37.1.12 96754 3c3dA 311 78.70 2a0mA 316 78.95 c.42.1.1 125960 2pzeA 229 79.09 1wx1A 335 81.10 1w9iA 770 81.32 1d0yA 761 84.88 b.34.3.1,c.37.1.9 24581,32178 1fnnA 389 86.79 a.4.5.11,c.37.1.20 16129,32426 1in6A 334 89.28 a.4.5.11,c.37.1.20 62601,62602