# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.008373 c.37.1.1 92788 2vp4A 230 0.08757 2z0hA 197 0.08990 2pbrA 195 0.3382 2p67A 341 0.4284 1zm7A 230 0.5358 5tmpA 213 0.6956 c.37.1.1 31931 1ukz 203 0.8018 1nn5A 215 0.9672 c.37.1.1 85892 1s4qA 228 1.039 c.37.1.1 98507 2axpA 173 1.121 c.37.1.1 127497 1s96A 219 1.260 c.37.1.1 98740 1qf9A 194 1.292 c.37.1.1 31848 1gtvA 214 1.417 c.37.1.1 70537 4tmkA 213 1.498 c.37.1.1 31930 1z8fA 228 1.555 2p5tB 253 1.598 2ax4A 198 1.633 2an9A 207 1.690 c.37.1.1 127037 1znwA 207 1.765 c.37.1.1 125412 1np6A 174 1.911 c.37.1.10 85954 2j41A 207 1.913 2plrA 213 1.916 2pezA 179 1.972 1e9eA 215 2.008 c.37.1.1 64810 1p5zB 263 2.393 c.37.1.1 87815 1ukzA 203 2.543 c.37.1.1 31840 1p9rA 418 2.891 c.37.1.11 94399 1gky 187 2.895 1ex7A 186 3.109 c.37.1.1 59537 1kagA 173 3.272 c.37.1.2 72249 2f1rA 171 3.385 1rz3A 201 3.456 c.37.1.6 98132 2bwjA 199 3.569 2ccjA 205 3.706 2gzaA 361 4.416 2bdtA 189 4.463 c.37.1.25 128344 2rhmA 193 6.518 1qhxA 178 6.752 c.37.1.3 31936 2q3fA 181 7.103 1kdoA 227 7.319 c.37.1.1 68478 2c95A 196 7.577 1xjcA 169 7.858 c.37.1.10 115387 2ff7A 247 7.950 c.37.1.12 133377 1zin 217 8.084 3tmkA 216 8.134 c.37.1.1 31920 2qt1A 207 8.636 2cbzA 237 8.789 1kngA 156 8.873 c.47.1.10 72777 1qhsA 178 9.409 c.37.1.3 31938 2oap1 511 10.01 2qorA 204 10.78 2pmkA 243 11.25 2ak3A 226 11.36 c.37.1.1,g.41.2.1 31892,45193 1akyA 220 12.50 c.37.1.1,g.41.2.1 31896,45197 1d6jA 211 12.61 c.37.1.4 31940 1kgdA 180 12.94 c.37.1.1 68582 1fj2A 232 13.06 c.69.1.14 34720 2yvuA 186 13.32 2qm8A 337 14.04 2ixeA 271 14.11 1nksA 194 14.84 c.37.1.1 31886 1yrbA 262 14.95 c.37.1.10 123915 1vmaA 306 14.98 a.24.13.1,c.37.1.10 108887,108888 1uj2A 252 15.37 c.37.1.6 99452 2qy9A 309 15.52 1z6gA 218 16.33 3be4A 217 17.99 3b9qA 302 18.65 2ga8A 359 20.52 1xewX 182 20.94 c.37.1.12 115235 1ji0A 240 21.37 c.37.1.12 71665 2b8wA 328 22.35 1p3jA 217 23.04 c.37.1.1,g.41.2.1 94022,94023 1ckeA 227 24.36 c.37.1.1 31846 1e69B 322 24.76 c.37.1.12 32377 1njgA 250 25.16 c.37.1.20 85785 2eyuA 261 25.51 1f2tA 149 25.66 c.37.1.12 32373 3c8uA 208 26.49 1g6oA 330 27.81 c.37.1.11 32430 1j8mF 297 27.88 a.24.13.1,c.37.1.10 62742,62743 2h8lA 252 28.92 1in4A 334 29.17 a.4.5.11,c.37.1.20 62597,62598 2pzeA 229 29.18 1htwA 158 29.31 c.37.1.18 71083 1sq5A 308 30.20 c.37.1.6 105882 1zu4A 320 30.99 1sgwA 214 32.46 c.37.1.12 105541 1rkbA 173 33.89 c.37.1.1 111854 1m7gA 211 35.76 c.37.1.4 78724 2nq2C 253 35.81 2obaA 138 38.17 2px0A 296 38.26 1fl9A 161 38.51 c.37.1.18 70137 1svsA 353 38.78 c.37.1.8 106051 1ltqA 301 40.12 c.108.1.9,c.37.1.1 78208,78209 1l7vC 249 41.58 c.37.1.12 73674 1e4yA 214 43.43 c.37.1.1,g.41.2.1 31901,45181 1zinA 217 43.49 c.37.1.1,g.41.2.1 31915,45178 1bif 469 43.62 2pt7A 330 43.77 2vqeI 128 43.93 2eu8A 216 45.29 1w9iA 770 45.35 2h0uA 217 46.36 1y63A 184 46.89 c.37.1.1 116494 1t9hA 307 49.83 b.40.4.5,c.37.1.8 112358,112359 2qxlA 658 50.01 1jj7A 260 50.62 c.37.1.12 63114 2qi9C 249 50.75 1l2tA 235 52.62 c.37.1.12 73514 2uubI 128 53.14 1ye8A 178 54.87 c.37.1.11 123010 1mnaA 298 54.94 c.69.1.22 79322 1gz0A 253 55.42 c.116.1.1,d.79.3.3 76391,76392 2og2A 359 55.45 2ipxA 233 55.52 1knqA 175 56.01 c.37.1.17 72786 1g6hA 257 57.40 c.37.1.12 60318 1x6vA 630 57.40 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1esmA 316 57.81 c.37.1.6 31953 1z47A 355 58.39 1khtA 192 58.44 c.37.1.1 84401 2cdnA 201 59.62 c.37.1.1 130289 2jrnA 163 60.10 1xmiA 291 61.86 c.37.1.12 115489 1g291 372 62.30 1a6sA 87 63.35 a.61.1.4 18134 1xrjA 261 63.51 c.37.1.6 122256 1gajA 257 63.78 c.37.1.12 60416 2j00I 128 64.49 d.14.1.1 137847 1azsC 388 65.84 a.66.1.1,c.37.1.8 18203,32086 1b0uA 262 67.10 c.37.1.12 32370 2k3aA 155 67.20 1zd8A 227 68.07 2fukA 220 68.50 1us8A 147 68.73 c.37.1.12 99859 3bifA 468 68.74 c.37.1.7,c.60.1.4 31962,34008 1ak2A 233 69.61 c.37.1.1,g.41.2.1 31894,45195 2bbsA 290 69.85 1tadA 324 70.81 a.66.1.1,c.37.1.8 18194,32077 1r0wA 286 74.57 c.37.1.12 96754 1yqtA 538 74.98 1oxsC 353 75.51 b.40.6.3,c.37.1.12 87519,87520 1t71A 281 76.35 d.159.1.9 112283 1vplA 256 77.44 c.37.1.12 113966 1kezA 300 78.10 c.69.1.22 68546 2d2eA 250 78.46 2fp8A 322 79.07 1viaA 175 79.98 c.37.1.2 100754 1nrjB 218 81.12 c.37.1.8 86125 2pjzA 263 83.39 1wl7A 312 84.96 b.67.2.1 120996 1tq6A 413 85.43 c.37.1.8 107202 2d3yA 219 86.13 1oxxK 353 87.09 b.40.6.3,c.37.1.12 93715,93716 1dseA 292 87.55 a.93.1.1 59130 1wucA 250 88.53 2akaA 776 88.89 1ho1A 242 89.93 c.1.24.1 61097