# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.01623 c.37.1.1 92788 2z0hA 197 0.1193 2vp4A 230 0.1650 1gtvA 214 0.3033 c.37.1.1 70537 1nn5A 215 0.3327 c.37.1.1 85892 2pbrA 195 0.3474 2p67A 341 0.5592 4tmkA 213 0.5837 c.37.1.1 31930 1zm7A 230 0.7013 1s4qA 228 0.8058 c.37.1.1 98507 1e9eA 215 0.8152 c.37.1.1 64810 5tmpA 213 0.8350 c.37.1.1 31931 2an9A 207 0.9078 c.37.1.1 127037 1s96A 219 0.9297 c.37.1.1 98740 1np6A 174 1.006 c.37.1.10 85954 2ax4A 198 1.087 1z8fA 228 1.097 2pezA 179 1.130 1znwA 207 1.293 c.37.1.1 125412 2axpA 173 1.485 c.37.1.1 127497 1p9rA 418 1.683 c.37.1.11 94399 1rz3A 201 1.719 c.37.1.6 98132 2j41A 207 1.779 1gky 187 2.100 1ukz 203 2.145 1ex7A 186 2.495 c.37.1.1 59537 2plrA 213 2.734 1p5zB 263 2.779 c.37.1.1 87815 2p5tB 253 2.791 2gzaA 361 3.036 2qorA 204 3.391 1qf9A 194 3.894 c.37.1.1 31848 2bwjA 199 3.998 2cbzA 237 5.328 2f1rA 171 5.340 1kagA 173 5.428 c.37.1.2 72249 2q3fA 181 5.495 1qhxA 178 5.887 c.37.1.3 31936 2bdtA 189 6.117 c.37.1.25 128344 2ff7A 247 6.183 c.37.1.12 133377 1zin 217 6.762 3be4A 217 6.764 1kdoA 227 7.340 c.37.1.1 68478 2oap1 511 7.946 1kgdA 180 8.852 c.37.1.1 68582 1ukzA 203 9.056 c.37.1.1 31840 2ak3A 226 9.276 c.37.1.1,g.41.2.1 31892,45193 2pmkA 243 9.307 2rhmA 193 9.551 1qhsA 178 9.674 c.37.1.3 31938 3tmkA 216 9.701 c.37.1.1 31920 1akyA 220 9.787 c.37.1.1,g.41.2.1 31896,45197 1z6gA 218 11.86 1xjcA 169 12.29 c.37.1.10 115387 2yvuA 186 13.20 2c95A 196 14.18 2qm8A 337 14.40 2b8wA 328 15.25 2ixeA 271 15.34 1e69B 322 16.75 c.37.1.12 32377 2ccjA 205 16.76 2qy9A 309 17.03 1fj2A 232 17.21 c.69.1.14 34720 1kngA 156 17.40 c.47.1.10 72777 1p3jA 217 17.52 c.37.1.1,g.41.2.1 94022,94023 2pzeA 229 19.35 1yrbA 262 19.48 c.37.1.10 123915 1vmaA 306 19.98 a.24.13.1,c.37.1.10 108887,108888 1sgwA 214 20.14 c.37.1.12 105541 1g6oA 330 20.99 c.37.1.11 32430 1d6jA 211 22.22 c.37.1.4 31940 1ji0A 240 22.36 c.37.1.12 71665 3c8uA 208 22.85 2pt7A 330 23.39 3b9qA 302 23.48 2qt1A 207 23.85 1e4yA 214 24.00 c.37.1.1,g.41.2.1 31901,45181 1ckeA 227 25.03 c.37.1.1 31846 2ga8A 359 25.95 1m7gA 211 28.45 c.37.1.4 78724 2eyuA 261 29.47 1rkbA 173 33.77 c.37.1.1 111854 2qi9C 249 34.37 2qxlA 658 34.45 2d2eA 250 36.99 2nq2C 253 37.02 1bif 469 37.96 1knqA 175 38.53 c.37.1.17 72786 2vqeI 128 39.89 1tq6A 413 40.13 c.37.1.8 107202 2h8lA 252 42.30 1ho1A 242 42.33 c.1.24.1 61097 1r0wA 286 43.13 c.37.1.12 96754 1t9hA 307 43.36 b.40.4.5,c.37.1.8 112358,112359 1vplA 256 43.75 c.37.1.12 113966 2bbsA 290 44.32 1mnaA 298 44.63 c.69.1.22 79322 2j00I 128 45.37 d.14.1.1 137847 1g291 372 46.11 1zinA 217 46.93 c.37.1.1,g.41.2.1 31915,45178 1yqtA 538 47.44 2uubI 128 47.55 1l2tA 235 48.91 c.37.1.12 73514 1w9iA 770 49.22 3bifA 468 50.05 c.37.1.7,c.60.1.4 31962,34008 1xmiA 291 50.13 c.37.1.12 115489 3cnyA 301 50.61 1b0uA 262 53.04 c.37.1.12 32370 2px0A 296 53.23 1l7vC 249 53.63 c.37.1.12 73674 1bouA 139 53.72 a.88.1.1 18521 1j8mF 297 54.11 a.24.13.1,c.37.1.10 62742,62743 1uj2A 252 54.22 c.37.1.6 99452 1ak2A 233 54.30 c.37.1.1,g.41.2.1 31894,45195 1f2tA 149 54.36 c.37.1.12 32373 1jj7A 260 54.75 c.37.1.12 63114 2og2A 359 55.18 1htwA 158 56.40 c.37.1.18 71083 1svsA 353 56.87 c.37.1.8 106051 1g6hA 257 57.85 c.37.1.12 60318 1kezA 300 57.88 c.69.1.22 68546 1in4A 334 59.51 a.4.5.11,c.37.1.20 62597,62598 1ye8A 178 59.65 c.37.1.11 123010 2eu8A 216 60.11 1viaA 175 60.84 c.37.1.2 100754 1fl9A 161 62.86 c.37.1.18 70137 2pjzA 263 64.09 1ewsA 32 64.98 g.9.1.1 59534 1zd8A 227 65.62 1auoA 218 65.72 c.69.1.14 34716 1bhgA 613 68.07 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1ybdA 239 69.99 c.73.1.3 122884 1gajA 257 70.01 c.37.1.12 60416 1njgA 250 70.30 c.37.1.20 85785 1z47A 355 73.44 2bkhA 814 76.74 1s8eA 333 78.69 d.159.1.4 105368 1gz0A 253 78.91 c.116.1.1,d.79.3.3 76391,76392 2fp8A 322 80.04 1zu4A 320 80.56 1nksA 194 81.61 c.37.1.1 31886 2h0uA 217 81.92 1sq5A 308 82.32 c.37.1.6 105882 1azsC 388 82.84 a.66.1.1,c.37.1.8 18203,32086 1e9rA 437 84.54 c.37.1.11 64827 2akaA 776 86.43 2pcjA 224 86.59 2og9A 393 86.76 1ltqA 301 88.38 c.108.1.9,c.37.1.1 78208,78209 1j3eA 115 89.11 d.228.1.1 103834 1oxsC 353 89.21 b.40.6.3,c.37.1.12 87519,87520 1esmA 316 89.38 c.37.1.6 31953 2v26A 784 89.50 1oxxK 353 89.82 b.40.6.3,c.37.1.12 93715,93716