# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.04831 c.37.1.1 92788 2z0hA 197 0.3634 2vp4A 230 0.3767 1ukz 203 0.5491 2p67A 341 0.9533 1s4qA 228 1.363 c.37.1.1 98507 1ukzA 203 1.527 c.37.1.1 31840 1zm7A 230 1.566 1nn5A 215 1.577 c.37.1.1 85892 5tmpA 213 1.647 c.37.1.1 31931 2plrA 213 1.657 2pbrA 195 1.754 1qf9A 194 1.768 c.37.1.1 31848 1s96A 219 1.910 c.37.1.1 98740 1gtvA 214 1.951 c.37.1.1 70537 2axpA 173 2.258 c.37.1.1 127497 1znwA 207 2.618 c.37.1.1 125412 1np6A 174 2.682 c.37.1.10 85954 2bwjA 199 2.703 2f1rA 171 3.428 4tmkA 213 3.502 c.37.1.1 31930 1z8fA 228 3.571 1e9eA 215 3.679 c.37.1.1 64810 1kagA 173 4.347 c.37.1.2 72249 2an9A 207 4.725 c.37.1.1 127037 2j41A 207 4.757 1zin 217 5.723 2c95A 196 5.734 2ak3A 226 5.863 c.37.1.1,g.41.2.1 31892,45193 1gky 187 6.338 1p5zB 263 6.899 c.37.1.1 87815 1ex7A 186 7.078 c.37.1.1 59537 1akyA 220 7.107 c.37.1.1,g.41.2.1 31896,45197 3be4A 217 8.824 1p9rA 418 9.277 c.37.1.11 94399 2ax4A 198 9.634 2qorA 204 11.19 1e4yA 214 11.39 c.37.1.1,g.41.2.1 31901,45181 2qt1A 207 11.53 2p5tB 253 11.55 2ff7A 247 11.96 c.37.1.12 133377 1p3jA 217 12.09 c.37.1.1,g.41.2.1 94022,94023 1rz3A 201 12.57 c.37.1.6 98132 1kdoA 227 13.30 c.37.1.1 68478 2gzaA 361 13.35 2cbzA 237 13.73 2pmkA 243 14.50 2pezA 179 14.95 1z6gA 218 17.93 1xjcA 169 20.07 c.37.1.10 115387 2bdtA 189 21.27 c.37.1.25 128344 1kngA 156 22.06 c.47.1.10 72777 2ixeA 271 24.12 3tmkA 216 24.27 c.37.1.1 31920 1rkbA 173 25.21 c.37.1.1 111854 2oap1 511 25.99 1y63A 184 26.52 c.37.1.1 116494 1ji0A 240 27.99 c.37.1.12 71665 2ccjA 205 28.83 1qhxA 178 29.46 c.37.1.3 31936 2rhmA 193 30.10 1ak2A 233 32.39 c.37.1.1,g.41.2.1 31894,45195 1njgA 250 32.54 c.37.1.20 85785 1zd8A 227 32.59 2q3fA 181 32.83 2pzeA 229 34.36 1qhsA 178 34.43 c.37.1.3 31938 1sgwA 214 34.44 c.37.1.12 105541 1kgdA 180 36.05 c.37.1.1 68582 2qm8A 337 36.93 1htwA 158 39.21 c.37.1.18 71083 2qy9A 309 39.99 1uj2A 252 43.31 c.37.1.6 99452 1zinA 217 43.52 c.37.1.1,g.41.2.1 31915,45178 2cdnA 201 43.76 c.37.1.1 130289 2qi9C 249 45.43 1e69B 322 45.49 c.37.1.12 32377 1fj2A 232 46.51 c.69.1.14 34720 1vmaA 306 46.74 a.24.13.1,c.37.1.10 108887,108888 1b8aA 438 50.39 b.40.4.1,d.104.1.1 25244,40765 1yrbA 262 52.21 c.37.1.10 123915 1g6hA 257 53.65 c.37.1.12 60318 1t9hA 307 55.16 b.40.4.5,c.37.1.8 112358,112359 2nq2C 253 56.11 1nksA 194 56.92 c.37.1.1 31886 3b9qA 302 58.17 1b0uA 262 61.22 c.37.1.12 32370 1fl9A 161 61.59 c.37.1.18 70137 2d2eA 250 61.81 2j00I 128 63.37 d.14.1.1 137847 2vqeI 128 64.24 1vplA 256 65.10 c.37.1.12 113966 1f2tA 149 65.83 c.37.1.12 32373 1l2tA 235 66.35 c.37.1.12 73514 1d6jA 211 66.37 c.37.1.4 31940 1gajA 257 66.51 c.37.1.12 60416 1l7vC 249 67.03 c.37.1.12 73674 2h8lA 252 67.72 2eu8A 216 70.66 2b8wA 328 72.17 2eyuA 261 73.36 1hvyA 288 74.36 d.117.1.1 41049 1jj7A 260 75.89 c.37.1.12 63114 1g291 372 76.38 1oxxK 353 76.43 b.40.6.3,c.37.1.12 93715,93716 1oxsC 353 77.72 b.40.6.3,c.37.1.12 87519,87520 2uubI 128 78.23 1knqA 175 78.36 c.37.1.17 72786 1z47A 355 78.98 1ltqA 301 79.55 c.108.1.9,c.37.1.1 78208,78209 1r0wA 286 79.59 c.37.1.12 96754 2pt7A 330 83.06 1ho1A 242 83.98 c.1.24.1 61097 1in4A 334 84.28 a.4.5.11,c.37.1.20 62597,62598 1yqtA 538 84.97 2yvuA 186 85.59 2pcjA 224 85.97 3c8uA 208 86.00 2ga8A 359 86.40 1dseA 292 86.63 a.93.1.1 59130 2bbsA 290 87.81 1xewX 182 87.99 c.37.1.12 115235 1ru0A 105 89.30 d.74.1.1 111937 1viaA 175 89.62 c.37.1.2 100754 1zu4A 320 89.91