# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.01771 c.37.1.1 92788 2z0hA 197 0.06903 1ukz 203 0.1958 2pbrA 195 0.2182 2p67A 341 0.2534 2vp4A 230 0.3572 5tmpA 213 0.3719 c.37.1.1 31931 1gtvA 214 0.3877 c.37.1.1 70537 1nn5A 215 0.4329 c.37.1.1 85892 1s4qA 228 0.4901 c.37.1.1 98507 1s96A 219 0.5568 c.37.1.1 98740 1znwA 207 0.6643 c.37.1.1 125412 1np6A 174 0.6814 c.37.1.10 85954 2f1rA 171 0.8758 1zin 217 0.8906 1ukzA 203 0.9009 c.37.1.1 31840 2plrA 213 1.023 1e9eA 215 1.135 c.37.1.1 64810 4tmkA 213 1.154 c.37.1.1 31930 2an9A 207 1.165 c.37.1.1 127037 1zm7A 230 1.188 1akyA 220 1.398 c.37.1.1,g.41.2.1 31896,45197 2j41A 207 1.513 3be4A 217 1.566 1z8fA 228 1.582 1qf9A 194 1.615 c.37.1.1 31848 2bwjA 199 1.695 2axpA 173 1.727 c.37.1.1 127497 2ax4A 198 1.939 2pezA 179 2.023 2ak3A 226 2.249 c.37.1.1,g.41.2.1 31892,45193 2gzaA 361 2.342 1gky 187 2.364 2cbzA 237 2.397 1kagA 173 2.826 c.37.1.2 72249 1p5zB 263 2.834 c.37.1.1 87815 1p3jA 217 2.868 c.37.1.1,g.41.2.1 94022,94023 2p5tB 253 2.876 1rz3A 201 2.914 c.37.1.6 98132 2ccjA 205 3.017 1ex7A 186 3.317 c.37.1.1 59537 2ff7A 247 3.733 c.37.1.12 133377 3tmkA 216 3.900 c.37.1.1 31920 2pmkA 243 4.454 1kdoA 227 4.464 c.37.1.1 68478 2c95A 196 4.618 2bdtA 189 4.671 c.37.1.25 128344 2qt1A 207 4.855 1p9rA 418 4.945 c.37.1.11 94399 2rhmA 193 5.083 1xjcA 169 5.278 c.37.1.10 115387 2qorA 204 5.518 1e4yA 214 5.937 c.37.1.1,g.41.2.1 31901,45181 2oap1 511 6.545 1ak2A 233 7.325 c.37.1.1,g.41.2.1 31894,45195 1ji0A 240 7.441 c.37.1.12 71665 2ixeA 271 7.566 1z6gA 218 7.971 1sgwA 214 8.855 c.37.1.12 105541 2yvuA 186 9.075 1qhxA 178 9.383 c.37.1.3 31936 1kgdA 180 9.434 c.37.1.1 68582 1qhsA 178 9.808 c.37.1.3 31938 2pzeA 229 10.59 1zinA 217 10.74 c.37.1.1,g.41.2.1 31915,45178 2qi9C 249 11.40 1zd8A 227 11.44 2q3fA 181 11.53 2qm8A 337 11.53 1vmaA 306 11.76 a.24.13.1,c.37.1.10 108887,108888 2eu8A 216 12.06 1f2tA 149 12.26 c.37.1.12 32373 1ckeA 227 12.72 c.37.1.1 31846 2qy9A 309 13.39 1fj2A 232 13.86 c.69.1.14 34720 1nksA 194 14.52 c.37.1.1 31886 1g6hA 257 15.10 c.37.1.12 60318 2cdnA 201 15.40 c.37.1.1 130289 1uj2A 252 15.40 c.37.1.6 99452 1htwA 158 16.24 c.37.1.18 71083 1njgA 250 17.71 c.37.1.20 85785 1e69B 322 17.99 c.37.1.12 32377 3c8uA 208 18.88 1jj7A 260 19.07 c.37.1.12 63114 1vplA 256 19.35 c.37.1.12 113966 3b9qA 302 19.59 1yrbA 262 19.87 c.37.1.10 123915 2pt7A 330 19.96 1l2tA 235 20.18 c.37.1.12 73514 2ga8A 359 20.93 1rkbA 173 22.09 c.37.1.1 111854 1fl9A 161 22.59 c.37.1.18 70137 1gajA 257 22.74 c.37.1.12 60416 2nq2C 253 22.85 1b8aA 438 23.85 b.40.4.1,d.104.1.1 25244,40765 1r0wA 286 23.97 c.37.1.12 96754 1zu4A 320 26.25 1kngA 156 26.80 c.47.1.10 72777 2bbsA 290 26.97 2vqeI 128 27.02 1yqtA 538 27.03 1b0uA 262 27.20 c.37.1.12 32370 1d6jA 211 27.38 c.37.1.4 31940 1t9hA 307 27.57 b.40.4.5,c.37.1.8 112358,112359 1g6oA 330 28.13 c.37.1.11 32430 1oxxK 353 30.08 b.40.6.3,c.37.1.12 93715,93716 1ho1A 242 30.16 c.1.24.1 61097 1oxsC 353 30.33 b.40.6.3,c.37.1.12 87519,87520 1xmiA 291 30.44 c.37.1.12 115489 1knqA 175 31.00 c.37.1.17 72786 2uubI 128 31.52 1j8mF 297 31.94 a.24.13.1,c.37.1.10 62742,62743 1z47A 355 32.88 1m7gA 211 33.21 c.37.1.4 78724 1g291 372 33.49 2j00I 128 34.76 d.14.1.1 137847 2pjzA 263 35.28 1in4A 334 35.55 a.4.5.11,c.37.1.20 62597,62598 2eyuA 261 35.92 1l7vC 249 36.14 c.37.1.12 73674 2pcjA 224 37.80 1gz0A 253 39.70 c.116.1.1,d.79.3.3 76391,76392 1ng1 294 39.84 1w9iA 770 40.87 2og2A 359 41.08 1sq5A 308 43.48 c.37.1.6 105882 1y63A 184 44.14 c.37.1.1 116494 1ltqA 301 44.26 c.108.1.9,c.37.1.1 78208,78209 2d2eA 250 44.27 3cnyA 301 45.48 1bif 469 48.00 1viaA 175 49.18 c.37.1.2 100754 1xewX 182 49.47 c.37.1.12 115235 1e9rA 437 50.70 c.37.1.11 64827 1us8A 147 52.82 c.37.1.12 99859 1tq6A 413 54.98 c.37.1.8 107202 1khtA 192 56.25 c.37.1.1 84401 1svsA 353 56.77 c.37.1.8 106051 1ls1A 295 57.46 a.24.13.1,c.37.1.10 78170,78171 2obaA 138 57.74 2qxlA 658 58.36 1xrjA 261 59.59 c.37.1.6 122256 2px0A 296 59.80 1axeA 374 59.84 b.35.1.2,c.2.1.1 24681,29697 1esmA 316 59.99 c.37.1.6 31953 2fp8A 322 61.33 2ipxA 233 62.61 1akeA 214 65.26 c.37.1.1,g.41.2.1 31905,45185 2h8lA 252 65.29 1mnaA 298 67.09 c.69.1.22 79322 1ee2A 373 69.47 b.35.1.2,c.2.1.1 24663,29679 1kezA 300 69.77 c.69.1.22 68546 1axgA 374 69.94 b.35.1.2,c.2.1.1 24691,29707 2dk7A 73 70.90 1t71A 281 77.23 d.159.1.9 112283 2k3aA 155 79.38 3bifA 468 79.97 c.37.1.7,c.60.1.4 31962,34008 1n8kA 374 82.44 b.35.1.2,c.2.1.1 80298,80299 1tadA 324 82.58 a.66.1.1,c.37.1.8 18194,32077 1p0fA 373 84.59 b.35.1.2,c.2.1.1 87642,87643 1azsC 388 85.10 a.66.1.1,c.37.1.8 18203,32086 1ye8A 178 87.02 c.37.1.11 123010