# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2plrA 213 0.1977 1ukz 203 0.2616 1s96A 219 0.3994 c.37.1.1 98740 2axpA 173 0.4070 c.37.1.1 127497 1ukzA 203 0.4390 c.37.1.1 31840 2bwjA 199 0.6283 2an9A 207 0.6456 c.37.1.1 127037 1oe0A 230 0.6818 c.37.1.1 92788 2rhmA 193 0.6924 1s4qA 228 0.8187 c.37.1.1 98507 1z8fA 228 0.9810 1znwA 207 1.097 c.37.1.1 125412 1qf9A 194 1.312 c.37.1.1 31848 2vp4A 230 1.322 2qorA 204 1.514 1e9eA 215 1.548 c.37.1.1 64810 1rkbA 173 1.629 c.37.1.1 111854 2c95A 196 1.777 1zm7A 230 1.960 5tmpA 213 2.127 c.37.1.1 31931 4tmkA 213 2.219 c.37.1.1 31930 1nn5A 215 2.223 c.37.1.1 85892 2z0hA 197 2.227 1kagA 173 2.259 c.37.1.2 72249 2pezA 179 2.292 1knqA 175 2.443 c.37.1.17 72786 1gtvA 214 2.646 c.37.1.1 70537 1y63A 184 2.763 c.37.1.1 116494 2yvuA 186 2.948 1zin 217 2.967 2pbrA 195 3.404 2cdnA 201 3.715 c.37.1.1 130289 1akyA 220 3.721 c.37.1.1,g.41.2.1 31896,45197 1kdoA 227 4.161 c.37.1.1 68478 2iyvA 184 5.678 c.37.1.2 137812 2qt1A 207 6.571 2bdtA 189 7.179 c.37.1.25 128344 3be4A 217 7.216 1z6gA 218 7.263 1rz3A 201 7.273 c.37.1.6 98132 1p3jA 217 7.418 c.37.1.1,g.41.2.1 94022,94023 1e4yA 214 8.343 c.37.1.1,g.41.2.1 31901,45181 1ak2A 233 8.714 c.37.1.1,g.41.2.1 31894,45195 1gky 187 8.804 3c8uA 208 8.995 2ak3A 226 9.781 c.37.1.1,g.41.2.1 31892,45193 1ex7A 186 10.62 c.37.1.1 59537 2j41A 207 11.17 1zd8A 227 11.59 2pt5A 168 12.63 2ga8A 359 12.76 2ax4A 198 13.36 1p5zB 263 13.81 c.37.1.1 87815 1in4A 334 14.37 a.4.5.11,c.37.1.20 62597,62598 2eu8A 216 14.99 2p5tB 253 16.18 2p67A 341 16.32 2g1kA 176 19.35 c.37.1.2 134519 1zinA 217 21.02 c.37.1.1,g.41.2.1 31915,45178 2cbzA 237 24.78 2ff7A 247 26.19 c.37.1.12 133377 2pmkA 243 27.91 1fj2A 232 31.22 c.69.1.14 34720 1bouA 139 31.44 a.88.1.1 18521 1qhsA 178 31.74 c.37.1.3 31938 1p9rA 418 33.82 c.37.1.11 94399 1uj2A 252 35.29 c.37.1.6 99452 1m7gA 211 35.40 c.37.1.4 78724 1viaA 175 35.78 c.37.1.2 100754 3tmkA 216 35.80 c.37.1.1 31920 2f1rA 171 35.90 1htwA 158 39.75 c.37.1.18 71083 2ccjA 205 40.95 1np6A 174 41.13 c.37.1.10 85954 1khtA 192 43.68 c.37.1.1 84401 2b8wA 328 44.26 2ixeA 271 44.69 1r0wA 286 46.49 c.37.1.12 96754 1ji0A 240 53.58 c.37.1.12 71665 1nksA 194 54.10 c.37.1.1 31886 1vmaA 306 54.40 a.24.13.1,c.37.1.10 108887,108888 2gzaA 361 54.50 1yqtA 538 56.03 1b0uA 262 56.25 c.37.1.12 32370 1yrbA 262 56.88 c.37.1.10 123915 2nq2C 253 57.49 2bbsA 290 59.79 1fl9A 161 60.47 c.37.1.18 70137 2d2eA 250 65.02 2pzeA 229 67.08 1in6A 334 68.64 a.4.5.11,c.37.1.20 62601,62602 1mnaA 298 70.13 c.69.1.22 79322 1shkA 173 70.56 c.37.1.2 31932 1bhgA 613 70.83 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2rgxA 206 71.96 1g6oA 330 72.94 c.37.1.11 32430 1xmiA 291 76.60 c.37.1.12 115489 1njgA 250 76.60 c.37.1.20 85785 1ggvA 232 78.27 c.69.1.9 34683 1kezA 300 78.61 c.69.1.22 68546 1akeA 214 83.00 c.37.1.1,g.41.2.1 31905,45185 1din 236 83.83 2akaA 776 86.52 1kgdA 180 87.34 c.37.1.1 68582 1vplA 256 87.35 c.37.1.12 113966