# List of top-scoring protein chains for T0419.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s96A 219 3.42e-10 c.37.1.1 98740 2an9A 207 3.54e-10 c.37.1.1 127037 2j41A 207 3.56e-09 1ex7A 186 4.60e-08 c.37.1.1 59537 1lvgA 198 6.11e-08 c.37.1.1 78242 1znwA 207 1.26e-07 c.37.1.1 125412 1s4qA 228 1.28e-07 c.37.1.1 98507 2ccgA 225 2.11e-07 1z8fA 228 2.19e-07 2ccjA 205 2.61e-07 4tmkA 213 8.20e-07 c.37.1.1 31930 2pbrA 195 1.02e-06 2qorA 204 2.49e-06 2z0hA 197 3.29e-06 1z6gA 218 8.26e-06 1e9fA 217 1.52e-05 c.37.1.1 64811 1e9eA 215 5.37e-05 c.37.1.1 64810 1nn5A 215 5.44e-05 c.37.1.1 85892 1e98A 215 6.30e-05 c.37.1.1 64804 1nmyA 209 6.46e-05 c.37.1.1 85883 2plrA 213 0.000219 3tmkA 216 0.002346 c.37.1.1 31920 2cdnA 201 0.005651 c.37.1.1 130289 1ukzA 203 0.006049 c.37.1.1 31840 1p4sA 181 0.007519 c.37.1.1 94117 3adkA 194 0.008747 c.37.1.1 31885 2rgxA 206 0.01122 2c95A 196 0.01525 1tevA 196 0.02059 c.37.1.1 106817 1gtvA 214 0.02546 c.37.1.1 70537 1qf9A 194 0.02621 c.37.1.1 31848 2bwjA 199 0.05333 1kgdA 180 0.05509 c.37.1.1 68582 2bbwA 246 0.06046 2jasA 206 0.07037 2jaqA 205 0.07580 1jxmA 301 0.07700 b.34.2.1,c.37.1.1 67420,67421 1kjwA 295 0.07708 b.34.2.1,c.37.1.1 68643,68644 1zakA 222 0.1215 c.37.1.1,g.41.2.1 31913,45202 2oo7A 217 0.1218 2p3sA 217 0.1299 2eu8A 216 0.1325 2qajA 217 0.1326 2qt1A 207 0.1334 1p3jA 217 0.1347 c.37.1.1,g.41.2.1 94022,94023 2oriA 216 0.1374 2qg6A 199 0.1424 2osbA 216 0.1474 1zm7A 230 0.1685 2jcsA 230 0.1716 2vp4A 230 0.1803 1dvrA 220 0.1947 c.37.1.1,g.41.2.1 31899,45200 2vp0A 250 0.2031 1akeA 214 0.2257 c.37.1.1,g.41.2.1 31905,45185 3be4A 217 0.2290 2femA 227 0.2586 2h92A 219 0.2793 1akyA 220 0.2810 c.37.1.1,g.41.2.1 31896,45197 3akyA 220 0.2824 c.37.1.1,g.41.2.1 31898,45199 1kdoA 227 0.3258 c.37.1.1 68478 2ocpA 241 0.3883 c.37.1.1 139012 1zinA 217 0.4440 c.37.1.1,g.41.2.1 31915,45178 1zp6A 191 0.4607 c.37.1.25 125456 1y63A 184 0.4951 c.37.1.1 116494 1ckeA 227 0.5155 c.37.1.1 31846 2a30A 248 0.5281 2qrnA 280 0.5322 1p5zB 263 0.5370 c.37.1.1 87815 1s3gA 217 0.5660 c.37.1.1,g.41.2.1 98433,98434 1e4vA 214 0.6597 c.37.1.1,g.41.2.1 31903,45183 2ak3A 226 0.8066 c.37.1.1,g.41.2.1 31892,45193 2no7A 280 0.8150 2zi6A 279 0.8154 1zd8A 227 0.8438 2zi3A 279 0.8530 2bdtA 189 1.095 c.37.1.25 128344 1rz3A 201 1.272 c.37.1.6 98132 1e4yA 214 1.340 c.37.1.1,g.41.2.1 31901,45181 1ak2A 233 1.406 c.37.1.1,g.41.2.1 31894,45195 2c9yA 242 1.414 2ga8A 359 1.415 1rkbA 173 1.546 c.37.1.1 111854 1jjvA 206 1.817 c.37.1.1 71698 2axpA 173 2.235 c.37.1.1 127497 3c8uA 208 2.667 2yvuA 186 2.897 1viaA 175 3.088 c.37.1.2 100754 1nksA 194 3.263 c.37.1.1 31886 2iyvA 184 3.497 c.37.1.2 137812 2g1kA 176 3.531 c.37.1.2 134519 1q3tA 236 3.648 c.37.1.1 104525 1m7gA 211 4.231 c.37.1.4 78724 1uj2A 252 4.366 c.37.1.6 99452 1xrjA 261 4.603 c.37.1.6 122256 2rhmA 193 5.565 1n3bA 216 5.610 c.37.1.1 79959 1t3hA 214 5.659 c.37.1.1 99117 1vhtA 218 5.929 c.37.1.1 100700 2ixgA 271 6.490 2ixeA 271 6.685 2ixfA 271 6.734 1kagA 173 7.170 c.37.1.2 72249 1ftsA 295 7.745 a.24.13.1,c.37.1.10 16968,32279 1knqA 175 7.807 c.37.1.17 72786 2pt5A 168 7.855 1vplA 256 7.908 c.37.1.12 113966 2qm8A 337 8.049 1uptA 171 8.309 c.37.1.8 99767 2qy9A 309 8.351 1uf9A 203 9.098 c.37.1.1 99326 2gksA 546 9.604 2gaoA 208 9.779 c.37.1.8 134891 1r4aA 165 9.98 c.37.1.8 96986 2if2A 204 10.42 1xzpA 482 10.51 a.24.25.1,c.37.1.8,d.250.1.2 116254,116255,116256 1sgwA 214 10.58 c.37.1.12 105541 1g41A 444 10.68 c.37.1.20 32450 2yz2A 266 10.90 2cxxA 190 12.08 c.37.1.8 131013 2pt7A 330 12.09 1qzxA 440 12.62 a.24.13.1,a.36.1.1,c.37.1.10 96711,96712,96713 1ji0A 240 13.07 c.37.1.12 71665 1mr3F 181 14.10 c.37.1.8 79422 1ofhA 310 14.86 c.37.1.20 86948 2i3bA 189 15.08 1qhxA 178 15.27 c.37.1.3 31936 1ly1A 181 15.59 c.37.1.1 74334 1jj7A 260 16.59 c.37.1.12 63114 2ax4A 198 17.22 2awnA 381 17.57 b.40.6.3,c.37.1.12 127459,127460 1q1bA 381 18.37 b.40.6.3,c.37.1.12 95562,95563 1mozA 183 18.59 c.37.1.8 79368 2grjA 192 18.92 2r6gA 381 19.19 2f6rA 281 19.42 2j37W 504 20.52 1np6A 174 20.54 c.37.1.10 85954 2bifA 469 21.03 c.37.1.7,c.60.1.4 31963,34009 2ofwA 208 21.23 2dykA 161 21.76 1p9nA 170 22.13 c.37.1.10 87997 3bifA 468 22.19 c.37.1.7,c.60.1.4 31962,34008 1lkxA 697 22.24 c.37.1.9 73981 1bifA 469 22.25 c.37.1.7,c.60.1.4 31961,34003 1xefA 241 23.00 1shkA 173 23.36 c.37.1.2 31932 1mt0A 241 23.41 c.37.1.12 85096 1e94E 449 23.54 c.37.1.20 32442 1g4aE 443 23.59 c.37.1.20 32444 1do0A 442 23.60 c.37.1.20 32432 2pmkA 243 24.50 2ffaA 247 25.02 2ff7A 247 25.43 c.37.1.12 133377 2ffbA 247 25.57 2f1rA 171 25.71 2fmxA 195 26.46 c.37.1.8 133796 2gj8A 172 26.71 c.37.1.8 135270 1rj9A 304 26.73 a.24.13.1,c.37.1.10 97553,97554 2b6hA 192 26.76 c.37.1.8 127994 2j7pD 283 27.20 a.24.13.1,c.37.1.10 138123,138124 2iylD 284 27.25 a.24.13.1,c.37.1.10 137801,137802 2q9cA 304 27.41 1okkD 303 27.41 a.24.13.1,c.37.1.10 93261,93262 1hurA 180 27.59 c.37.1.8 32052 2yyzA 359 27.60 1r8qA 181 27.83 c.37.1.8 97243 1f6bA 198 28.13 c.37.1.8 64986 3b9qA 302 29.22 1yqtA 538 29.51 2ofxA 207 30.55 1ihuA 589 30.64 c.37.1.10,c.37.1.10 62394,62395 2fa9A 189 31.60 2e87A 357 31.71 1rflA 172 32.10 c.37.1.8 97384 2og2A 359 34.25 2pezA 179 34.35 2qmoA 220 35.51 2jeoA 245 35.59 2h57A 190 35.89 1f3oA 235 38.78 c.37.1.12 59631 2eyuA 261 39.62 1l2tA 235 39.64 c.37.1.12 73514 2a5gA 175 41.67 c.37.1.8 126174 1j8mF 297 41.97 a.24.13.1,c.37.1.10 62742,62743 2j3eA 249 42.19 3b5jA 243 42.61 2j289 430 42.73 1o3yA 166 42.98 c.37.1.8 86618 1d2nA 272 43.32 c.37.1.20 32428 1e0sA 174 44.11 c.37.1.8 32057 2a5dA 175 44.14 c.37.1.8 126172 2zejA 184 44.51 2pcjA 224 44.85 2v3cC 432 45.06 1nsfA 273 45.67 c.37.1.20 32429 1mv5A 243 47.01 c.37.1.12 91469 1in5A 334 48.60 a.4.5.11,c.37.1.20 62599,62600 2ihyA 279 49.36 1in8A 334 50.52 a.4.5.11,c.37.1.20 62605,62606 1z47A 355 51.44 2rkoA 331 51.92 1dekA 241 52.05 c.37.1.1 31842 1in4A 334 54.64 a.4.5.11,c.37.1.20 62597,62598 1sviA 195 54.85 c.37.1.8 106048 2qu8A 228 54.86 1in7A 334 55.49 a.4.5.11,c.37.1.20 62603,62604 2p5tB 253 55.72 1nrjB 218 55.73 c.37.1.8 86125 3bb4A 262 56.14 3bb3A 262 57.42 1r8sA 164 57.70 c.37.1.8 97247 3crrA 323 60.62 1vyuA 351 60.80 b.34.2.1,c.37.1.1 108914,108915 2qp9X 355 64.02 2nq2C 253 64.56 2cbzA 237 69.66 1ltqA 301 69.73 c.108.1.9,c.37.1.1 78208,78209 2pzeA 229 70.93 1ixsB 318 71.05 a.4.5.11,c.37.1.20 76933,76934 2d2eA 250 71.13 1ixrC 312 71.26 a.4.5.11,c.37.1.20 76930,76931 1hqcA 324 71.45 a.4.5.11,c.37.1.20 16127,32424 1j7kA 334 73.08 a.4.5.11,c.37.1.20 62695,62696 2gszA 363 73.28 2ewvA 372 73.58 2bboA 291 74.50 1xd8A 289 75.09 2pzgA 241 76.21 1ki9A 192 78.54 c.37.1.1 84404 1g20E 289 81.20 c.37.1.10 32247 1zuhA 168 81.41 1xdbA 289 82.68 2c8vA 288 83.77 c.37.1.10 130128 3cf0A 301 83.99 2afhE 289 84.09 c.37.1.10 126683 1de0A 289 84.57 c.37.1.10 32255 1yrbA 262 84.91 c.37.1.10 123915 1sxjB 323 86.90 a.80.1.1,c.37.1.20 106083,106084 1e6cA 173 87.01 c.37.1.2 59296 2qtvB 167 87.40 2ew1A 201 88.27 c.37.1.8 132446 1m2oB 190 88.58 c.37.1.8 78485 1rw4A 272 89.60 c.37.1.10 97962 3bh6A 164 89.80