# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 9.31e-07 1znwA 207 1.45e-06 c.37.1.1 125412 1kjwA 295 2.51e-06 b.34.2.1,c.37.1.1 68643,68644 1ex7A 186 3.41e-06 c.37.1.1 59537 2qorA 204 3.81e-06 2j41A 207 4.55e-06 1kgdA 180 6.40e-06 c.37.1.1 68582 2pbrA 195 1.02e-05 4tmkA 213 1.73e-05 c.37.1.1 31930 1s96A 219 0.000111 c.37.1.1 98740 1gtvA 214 0.000114 c.37.1.1 70537 2an9A 207 0.000121 c.37.1.1 127037 2ccjA 205 0.000136 1of1A 376 0.000171 c.37.1.1 103924 2z0hA 197 0.000180 1p5zB 263 0.000182 c.37.1.1 87815 1ukzA 203 0.000197 c.37.1.1 31840 1qf9A 194 0.000257 c.37.1.1 31848 1ukz 203 0.000296 1p6xA 334 0.000303 c.37.1.1 94195 2c95A 196 0.000320 1e2kA 331 0.000359 c.37.1.1 31854 2bwjA 199 0.000426 1t0hB 224 0.000742 c.37.1.1 106208 2cdnA 201 0.001206 c.37.1.1 130289 1ki9A 192 0.001302 c.37.1.1 84404 2plrA 213 0.001741 2vp4A 230 0.001793 1zm7A 230 0.001967 2qt1A 207 0.001996 2axpA 173 0.002197 c.37.1.1 127497 1vhtA 218 0.003479 c.37.1.1 100700 1khtA 192 0.003561 c.37.1.1 84401 1y63A 184 0.004184 c.37.1.1 116494 2f6rA 281 0.004411 1ak2A 233 0.004752 c.37.1.1,g.41.2.1 31894,45195 2rgxA 206 0.004782 1e4yA 214 0.004866 c.37.1.1,g.41.2.1 31901,45181 1qhxA 178 0.004939 c.37.1.3 31936 1zin 217 0.005536 2ak3A 226 0.005573 c.37.1.1,g.41.2.1 31892,45193 1akyA 220 0.005579 c.37.1.1,g.41.2.1 31896,45197 3be4A 217 0.006504 2rhmA 193 0.007282 1e6cA 173 0.008979 c.37.1.2 59296 1zd8A 227 0.009575 1kdoA 227 0.01025 c.37.1.1 68478 2eu8A 216 0.01046 3tmkA 216 0.01150 c.37.1.1 31920 1ckeA 227 0.01270 c.37.1.1 31846 1zinA 217 0.01300 c.37.1.1,g.41.2.1 31915,45178 1knqA 175 0.01479 c.37.1.17 72786 1viaA 175 0.01499 c.37.1.2 100754 2pezA 179 0.01571 2bdtA 189 0.01695 c.37.1.25 128344 1uj2A 252 0.01711 c.37.1.6 99452 1jjvA 206 0.01971 c.37.1.1 71698 2yvuA 186 0.02023 2grjA 192 0.02047 1nn5A 215 0.02334 c.37.1.1 85892 2iyvA 184 0.02940 c.37.1.2 137812 2pt5A 168 0.03458 1xrjA 261 0.03618 c.37.1.6 122256 2g1kA 176 0.03787 c.37.1.2 134519 1rkbA 173 0.04194 c.37.1.1 111854 1ltqA 301 0.06807 c.108.1.9,c.37.1.1 78208,78209 1ly1A 181 0.07914 c.37.1.1 74334 1zuhA 168 0.07946 3c8uA 208 0.09010 1m7gA 211 0.1659 c.37.1.4 78724 1rz3A 201 0.1768 c.37.1.6 98132 1gvnB 287 0.1872 c.37.1.21 76354 2ax4A 198 0.2453 2qgnA 322 0.2476 3crrA 323 0.3056 1kagA 173 0.3117 c.37.1.2 72249 2p5tB 253 0.6032 1a7jA 290 0.7099 c.37.1.6 31952 1dekA 241 0.8143 c.37.1.1 31842 1a7j 290 1.165 1xjcA 169 1.339 c.37.1.10 115387 2f1rA 171 1.620 1l2tA 235 1.659 c.37.1.12 73514 1xx6A 191 1.743 c.37.1.24,g.39.1.14 116139,116140 1np6A 174 1.898 c.37.1.10 85954 1lv7A 257 2.873 c.37.1.20 78232 2cbzA 237 3.009 2nq2C 253 3.030 2pzeA 229 3.198 2pcjA 224 3.757 1w5tA 412 3.909 a.4.5.11,c.37.1.20 114255,114256 1g6hA 257 3.972 c.37.1.12 60318 1yqtA 538 4.195 2pmkA 243 4.251 2ihyA 279 4.620 2p67A 341 4.719 1ji0A 240 4.917 c.37.1.12 71665 1in4A 334 4.926 a.4.5.11,c.37.1.20 62597,62598 1rj9A 304 4.934 a.24.13.1,c.37.1.10 97553,97554 1vplA 256 5.909 c.37.1.12 113966 2fnaA 357 6.058 a.4.5.11,c.37.1.20 133809,133810 2ze7A 253 6.197 2orwA 184 6.387 2d2eA 250 6.491 2ixeA 271 6.540 1sgwA 214 7.096 c.37.1.12 105541 2hf9A 226 7.335 2ff7A 247 7.404 c.37.1.12 133377 1g291 372 7.593 2it1A 362 7.698 2ga8A 359 7.764 1z47A 355 7.788 1d2nA 272 7.910 c.37.1.20 32428 2bbsA 290 7.925 1fnnA 389 7.991 a.4.5.11,c.37.1.20 16129,32426 1u94A 356 8.044 c.37.1.11,d.48.1.1 107743,107744 2vhjA 331 8.311 2gzaA 361 8.505 1sq5A 308 8.825 c.37.1.6 105882 2qy9A 309 9.060 2qi9C 249 9.293 1in6A 334 9.485 a.4.5.11,c.37.1.20 62601,62602 1g6oA 330 9.572 c.37.1.11 32430 2pjzA 263 10.26 1zu4A 320 10.27 1xewX 182 10.59 c.37.1.12 115235 1b0uA 262 10.72 c.37.1.12 32370 1oxxK 353 10.90 b.40.6.3,c.37.1.12 93715,93716 2c8vA 288 11.00 c.37.1.10 130128 2r2aA 199 11.22 1a5t 334 11.35 1bifA 469 11.43 c.37.1.7,c.60.1.4 31961,34003 1tq4A 413 11.51 c.37.1.8 107201 2q3hA 201 11.74 2r44A 331 12.41 2eyuA 261 12.53 1a5tA 334 12.75 a.80.1.1,c.37.1.20 18450,32423 1ihuA 589 13.38 c.37.1.10,c.37.1.10 62394,62395 1gl6A 436 13.48 c.37.1.11 70259 2dpxA 174 13.94 2cvhA 220 14.45 1w4rA 195 14.45 2gjsA 176 14.67 c.37.1.8 135287 1mh1A 186 14.95 c.37.1.8 32002 2pt7A 330 15.32 1knxA 312 15.39 c.98.2.1,c.91.1.2 77459,77460 2og2A 359 16.25 1xd8A 289 16.37 2b8tA 223 16.64 c.37.1.24,g.39.1.14 128109,128110 1m7bA 184 17.01 c.37.1.8 74572 1h65A 270 17.15 c.37.1.8 65640 2afhE 289 17.26 c.37.1.10 126683 1e9rA 437 17.85 c.37.1.11 64827 1g8pA 350 17.98 c.37.1.20 60376 1tueA 212 18.48 c.37.1.20 107323 1sxjA 511 18.68 a.80.1.1,c.37.1.20 106081,106082 1x6vA 630 19.17 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1ky3A 182 19.29 c.37.1.8 73193 1wcv1 257 19.33 1njgA 250 19.72 c.37.1.20 85785 1xp8A 366 19.76 c.37.1.11,d.48.1.1 115735,115736 2akaB 299 19.84 c.37.1.8 126914 2bekA 257 20.07 1bif 469 20.10 1cr1A 296 20.60 c.37.1.11 32286 1z08A 170 22.02 c.37.1.8 124303 2bcgY 206 22.19 c.37.1.8 128285 1zj6A 187 22.25 c.37.1.8 125145 1htwA 158 23.73 c.37.1.18 71083 1g41A 444 25.07 c.37.1.20 32450 3b9qA 302 25.72 2oap1 511 25.93 1sxjC 340 26.61 a.80.1.1,c.37.1.20 106085,106086 2zadA 345 26.88 1pujA 282 27.32 c.37.1.8 88294 2i1qA 322 28.07 a.60.4.1,c.37.1.11 136984,136985 1uxoA 192 28.18 c.69.1.31 108121 1cp2A 269 29.32 c.37.1.10 32269 1qhlA 227 29.84 c.37.1.12 32382 1wf3A 301 30.31 c.37.1.8,d.52.3.1 114574,114575 2bjvA 265 30.78 2zejA 184 31.30 1f6bA 198 31.56 c.37.1.8 64986 3bwdD 182 32.86 2qm8A 337 33.28 2qgzA 308 34.40 1ls1A 295 34.65 a.24.13.1,c.37.1.10 78170,78171 1sxjE 354 35.01 a.80.1.1,c.37.1.20 106089,106090 1nijA 318 36.61 c.37.1.10,d.237.1.1 85741,85742 3bs4A 260 37.14 1j8mF 297 37.19 a.24.13.1,c.37.1.10 62742,62743 1ko7A 314 37.24 c.98.2.1,c.91.1.2 72797,72798 2a5dA 175 38.81 c.37.1.8 126172 2j69A 695 38.95 3b9pA 297 39.73 1r8sA 164 40.72 c.37.1.8 97247 1ye8A 178 40.78 c.37.1.11 123010 3c5cA 187 40.86 1w44A 331 41.24 c.37.1.11 114147 2a5yB 549 41.91 2dr3A 247 41.94 2c9oA 456 41.96 2chgA 226 42.58 1ufoA 238 44.37 c.69.1.27 99344 1u9iA 519 45.24 c.37.1.11,c.37.1.11 119637,119638 2gcoA 201 45.53 1jbkA 195 45.75 c.37.1.20 71631 2qjwA 176 48.24 3bosA 242 48.52 2bmeA 186 49.73 c.37.1.8 128790 1odfA 290 50.61 c.37.1.6 92782 1fzqA 181 50.97 c.37.1.8 32060 1x3sA 195 51.30 c.37.1.8 121670 1tca 317 54.32 2h17A 181 54.92 2e87A 357 55.82 1kshA 186 56.14 c.37.1.8 72914 1nlfA 279 56.75 c.37.1.11 85850 1uptA 171 57.10 c.37.1.8 99767 2gxaA 274 58.35 2rexB 197 60.09 1byi 224 60.32 1z2aA 168 61.76 c.37.1.8 124374 1g3qA 237 61.84 c.37.1.10 60237 2g6bA 180 62.83 c.37.1.8 134701 2q3fA 181 64.14 1kmqA 184 65.46 c.37.1.8 84412 1o3yA 166 65.76 c.37.1.8 86618 2p65A 187 66.15 2o5vA 359 66.67 3bfkA 181 67.09 1z06A 189 70.56 c.37.1.8 124301 1ionA 243 76.07 c.37.1.10 62633 1b6g 310 76.64 1w9iA 770 76.80 2qu8A 228 80.53 1svmA 377 81.07 c.37.1.20 112126 2j4dA 525 82.03 2oblA 347 82.40 2a5jA 191 83.09 c.37.1.8 126175 1yzqA 170 84.83 c.37.1.8 124286 2og1A 286 85.05 2gf9A 189 85.88 1r2qA 170 85.89 c.37.1.8 96874 2gj8A 172 86.02 c.37.1.8 135270 2r8rA 228 86.84 2ozeA 298 89.39