# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kjwA 295 2.23e-07 b.34.2.1,c.37.1.1 68643,68644 1gky 187 2.56e-07 1znwA 207 4.59e-07 c.37.1.1 125412 1ex7A 186 1.09e-06 c.37.1.1 59537 2qorA 204 1.23e-06 2j41A 207 1.25e-06 1kgdA 180 1.37e-06 c.37.1.1 68582 2pbrA 195 7.17e-06 1s96A 219 1.51e-05 c.37.1.1 98740 4tmkA 213 1.56e-05 c.37.1.1 31930 2an9A 207 2.04e-05 c.37.1.1 127037 1gtvA 214 6.98e-05 c.37.1.1 70537 1ukzA 203 0.000105 c.37.1.1 31840 2z0hA 197 0.000116 1t0hB 224 0.000127 c.37.1.1 106208 2c95A 196 0.000145 1ukz 203 0.000168 1p5zB 263 0.000170 c.37.1.1 87815 2ccjA 205 0.000177 1of1A 376 0.000212 c.37.1.1 103924 2bwjA 199 0.000229 1qf9A 194 0.000240 c.37.1.1 31848 1p6xA 334 0.000268 c.37.1.1 94195 1e2kA 331 0.000373 c.37.1.1 31854 1ki9A 192 0.000820 c.37.1.1 84404 2cdnA 201 0.000872 c.37.1.1 130289 2qt1A 207 0.000999 2plrA 213 0.001241 1zm7A 230 0.001268 2vp4A 230 0.001309 1akyA 220 0.001732 c.37.1.1,g.41.2.1 31896,45197 2ak3A 226 0.001827 c.37.1.1,g.41.2.1 31892,45193 1vhtA 218 0.001909 c.37.1.1 100700 1e4yA 214 0.002134 c.37.1.1,g.41.2.1 31901,45181 1khtA 192 0.002411 c.37.1.1 84401 2axpA 173 0.002576 c.37.1.1 127497 2rgxA 206 0.002745 1ak2A 233 0.002986 c.37.1.1,g.41.2.1 31894,45195 1zin 217 0.003027 1y63A 184 0.003094 c.37.1.1 116494 3be4A 217 0.003280 2f6rA 281 0.003971 1zd8A 227 0.004208 2eu8A 216 0.005287 1qhxA 178 0.005715 c.37.1.3 31936 1nn5A 215 0.006529 c.37.1.1 85892 3tmkA 216 0.007204 c.37.1.1 31920 1zinA 217 0.007779 c.37.1.1,g.41.2.1 31915,45178 2bdtA 189 0.007895 c.37.1.25 128344 2rhmA 193 0.009750 1e6cA 173 0.01089 c.37.1.2 59296 1kdoA 227 0.01091 c.37.1.1 68478 1uj2A 252 0.01185 c.37.1.6 99452 1jjvA 206 0.01358 c.37.1.1 71698 2pezA 179 0.01443 2grjA 192 0.01490 1viaA 175 0.01900 c.37.1.2 100754 1knqA 175 0.01973 c.37.1.17 72786 1ckeA 227 0.02166 c.37.1.1 31846 2pt5A 168 0.02172 2iyvA 184 0.02298 c.37.1.2 137812 2yvuA 186 0.02503 1xrjA 261 0.02791 c.37.1.6 122256 3c8uA 208 0.03100 1rkbA 173 0.03368 c.37.1.1 111854 2g1kA 176 0.03446 c.37.1.2 134519 1ltqA 301 0.06518 c.108.1.9,c.37.1.1 78208,78209 1zuhA 168 0.07105 1rz3A 201 0.1035 c.37.1.6 98132 2qgnA 322 0.1469 1gvnB 287 0.1530 c.37.1.21 76354 3crrA 323 0.1554 1m7gA 211 0.1588 c.37.1.4 78724 1kagA 173 0.1829 c.37.1.2 72249 1ly1A 181 0.2026 c.37.1.1 74334 2ax4A 198 0.2137 1a7jA 290 0.3043 c.37.1.6 31952 1dekA 241 0.6234 c.37.1.1 31842 2p5tB 253 0.7040 2f1rA 171 0.7667 1a7j 290 0.8422 1xjcA 169 0.8534 c.37.1.10 115387 1xx6A 191 0.8923 c.37.1.24,g.39.1.14 116139,116140 1w5tA 412 1.008 a.4.5.11,c.37.1.20 114255,114256 1l2tA 235 1.070 c.37.1.12 73514 2orwA 184 1.228 1np6A 174 1.422 c.37.1.10 85954 2pzeA 229 2.520 2d2eA 250 2.564 2cbzA 237 2.740 2pmkA 243 2.968 2ze7A 253 3.403 1lv7A 257 3.520 c.37.1.20 78232 2pcjA 224 3.682 2nq2C 253 4.167 1g6hA 257 4.229 c.37.1.12 60318 2ff7A 247 4.262 c.37.1.12 133377 1yqtA 538 4.338 2ixeA 271 4.542 1ji0A 240 4.598 c.37.1.12 71665 1vplA 256 4.615 c.37.1.12 113966 2ihyA 279 4.849 2p67A 341 5.018 1in4A 334 5.179 a.4.5.11,c.37.1.20 62597,62598 1b0uA 262 5.566 c.37.1.12 32370 1rj9A 304 5.833 a.24.13.1,c.37.1.10 97553,97554 2qi9C 249 5.844 2ga8A 359 5.964 1xewX 182 6.448 c.37.1.12 115235 1sq5A 308 6.754 c.37.1.6 105882 1d2nA 272 7.378 c.37.1.20 32428 1bifA 469 7.690 c.37.1.7,c.60.1.4 31961,34003 2fnaA 357 7.805 a.4.5.11,c.37.1.20 133809,133810 2bbsA 290 7.892 2vhjA 331 7.916 1sxjA 511 8.107 a.80.1.1,c.37.1.20 106081,106082 2gzaA 361 8.182 2eyuA 261 8.579 1sgwA 214 8.900 c.37.1.12 105541 2pjzA 263 9.153 1z47A 355 9.480 2r2aA 199 10.02 1w4rA 195 10.75 1fnnA 389 10.75 a.4.5.11,c.37.1.20 16129,32426 2r44A 331 11.14 2qy9A 309 11.83 1e9rA 437 12.21 c.37.1.11 64827 1knxA 312 12.42 c.98.2.1,c.91.1.2 77459,77460 2hf9A 226 12.47 2oap1 511 12.48 1pujA 282 12.52 c.37.1.8 88294 1zu4A 320 12.56 1in6A 334 12.62 a.4.5.11,c.37.1.20 62601,62602 1g291 372 12.68 2b8tA 223 12.84 c.37.1.24,g.39.1.14 128109,128110 1tueA 212 12.92 c.37.1.20 107323 1gl6A 436 13.53 c.37.1.11 70259 1u94A 356 13.97 c.37.1.11,d.48.1.1 107743,107744 1w44A 331 14.41 c.37.1.11 114147 1h65A 270 15.60 c.37.1.8 65640 1a5tA 334 15.63 a.80.1.1,c.37.1.20 18450,32423 1m7bA 184 15.80 c.37.1.8 74572 1sxjE 354 15.96 a.80.1.1,c.37.1.20 106089,106090 3b9qA 302 16.07 2gjsA 176 16.08 c.37.1.8 135287 2akaB 299 16.45 c.37.1.8 126914 2dpxA 174 16.52 1mh1A 186 16.79 c.37.1.8 32002 2it1A 362 17.31 1bif 469 17.36 2og2A 359 20.12 1tq4A 413 20.47 c.37.1.8 107201 2dr3A 247 20.60 1ky3A 182 20.73 c.37.1.8 73193 1g6oA 330 21.03 c.37.1.11 32430 2q3hA 201 22.36 1odfA 290 22.43 c.37.1.6 92782 2c8vA 288 23.21 c.37.1.10 130128 2pt7A 330 23.55 1a5t 334 23.66 1wf3A 301 23.90 c.37.1.8,d.52.3.1 114574,114575 1g8pA 350 24.35 c.37.1.20 60376 1uxoA 192 25.79 c.69.1.31 108121 1g41A 444 26.19 c.37.1.20 32450 2cvhA 220 26.49 1wcv1 257 26.70 2bjvA 265 26.73 1njgA 250 26.93 c.37.1.20 85785 2c9oA 456 27.07 2bekA 257 27.23 2afhE 289 27.71 c.37.1.10 126683 1ihuA 589 28.28 c.37.1.10,c.37.1.10 62394,62395 1u9iA 519 29.70 c.37.1.11,c.37.1.11 119637,119638 1ko7A 314 29.82 c.98.2.1,c.91.1.2 72797,72798 1ls1A 295 29.82 a.24.13.1,c.37.1.10 78170,78171 1z08A 170 30.20 c.37.1.8 124303 2qgzA 308 30.30 1ye8A 178 31.13 c.37.1.11 123010 1oxxK 353 32.20 b.40.6.3,c.37.1.12 93715,93716 1f2tA 149 33.09 c.37.1.12 32373 1b6g 310 34.15 1xd8A 289 35.15 1cr1A 296 35.59 c.37.1.11 32286 2qm8A 337 39.29 1byi 224 40.82 2oblA 347 40.86 1w9iA 770 41.86 1htwA 158 41.96 c.37.1.18 71083 1sxjC 340 42.13 a.80.1.1,c.37.1.20 106085,106086 2gj8A 172 42.87 c.37.1.8 135270 3bwdD 182 42.98 2qjwA 176 43.06 1x6vA 630 43.36 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1nlfA 279 43.49 c.37.1.11 85850 1nijA 318 45.05 c.37.1.10,d.237.1.1 85741,85742 3b9pA 297 46.37 1zj6A 187 47.42 c.37.1.8 125145 1xp8A 366 47.77 c.37.1.11,d.48.1.1 115735,115736 1brt 277 48.31 2i1qA 322 49.08 a.60.4.1,c.37.1.11 136984,136985 2bkhA 814 49.20 2v26A 784 49.76 1qhlA 227 49.83 c.37.1.12 32382 2rexB 197 50.06 3bosA 242 50.70 2gxaA 274 51.32 2ozeA 298 52.62 1j8mF 297 52.99 a.24.13.1,c.37.1.10 62742,62743 2zadA 345 53.14 2gcoA 201 54.59 2zejA 184 55.21 2a5dA 175 55.69 c.37.1.8 126172 1tca 317 57.57 1ufoA 238 59.47 c.69.1.27 99344 2chgA 226 59.91 1pjrA 724 60.04 c.37.1.19,c.37.1.19 32391,32392 2og1A 286 61.19 1uptA 171 61.50 c.37.1.8 99767 1g3qA 237 62.53 c.37.1.10 60237 2q3fA 181 63.36 1r8sA 164 63.41 c.37.1.8 97247 1l7aA 318 65.56 c.69.1.25 77772 1z06A 189 66.12 c.37.1.8 124301 2dbyA 368 66.41 2g6bA 180 68.14 c.37.1.8 134701 1kshA 186 68.55 c.37.1.8 72914 2ghtA 181 69.49 1jbkA 195 69.59 c.37.1.20 71631 3bfkA 181 70.32 2r8rA 228 70.65 2fz4A 237 71.92 c.37.1.19 134419 2h17A 181 71.97 3bs4A 260 73.86 2bcgY 206 76.66 c.37.1.8 128285 1f6bA 198 79.98 c.37.1.8 64986 2qu8A 228 80.04 1fzqA 181 80.58 c.37.1.8 32060 2p65A 187 82.97 3c5cA 187 83.27 1b6gA 310 84.36 c.69.1.8 34661 1o3yA 166 84.64 c.37.1.8 86618 3bh0A 315 85.52 1x3sA 195 86.19 c.37.1.8 121670 2p5sA 199 86.24 2dpyA 438 88.00 1jalA 363 88.63 c.37.1.8,d.15.10.2 84138,84139