# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 5.60e-07 1kjwA 295 5.85e-07 b.34.2.1,c.37.1.1 68643,68644 2qorA 204 6.61e-07 1znwA 207 7.52e-07 c.37.1.1 125412 1ex7A 186 1.60e-06 c.37.1.1 59537 1kgdA 180 2.39e-06 c.37.1.1 68582 2j41A 207 2.76e-06 2pbrA 195 5.07e-06 1s96A 219 2.24e-05 c.37.1.1 98740 4tmkA 213 2.27e-05 c.37.1.1 31930 2an9A 207 2.45e-05 c.37.1.1 127037 2ccjA 205 5.99e-05 1ukzA 203 6.25e-05 c.37.1.1 31840 1gtvA 214 6.94e-05 c.37.1.1 70537 2c95A 196 0.000109 1of1A 376 0.000150 c.37.1.1 103924 1ukz 203 0.000158 2z0hA 197 0.000203 2bwjA 199 0.000240 1p5zB 263 0.000274 c.37.1.1 87815 1qf9A 194 0.000329 c.37.1.1 31848 1ki9A 192 0.000422 c.37.1.1 84404 1t0hB 224 0.000464 c.37.1.1 106208 2cdnA 201 0.000553 c.37.1.1 130289 2plrA 213 0.000595 1p6xA 334 0.000672 c.37.1.1 94195 2axpA 173 0.000693 c.37.1.1 127497 1e2kA 331 0.000866 c.37.1.1 31854 1khtA 192 0.000981 c.37.1.1 84401 1vhtA 218 0.001041 c.37.1.1 100700 1qhxA 178 0.001156 c.37.1.3 31936 2qt1A 207 0.001354 2f6rA 281 0.001371 2ak3A 226 0.001476 c.37.1.1,g.41.2.1 31892,45193 1akyA 220 0.001926 c.37.1.1,g.41.2.1 31896,45197 1zm7A 230 0.002421 3tmkA 216 0.002454 c.37.1.1 31920 1e6cA 173 0.002525 c.37.1.2 59296 2rgxA 206 0.002574 2iyvA 184 0.003111 c.37.1.2 137812 1y63A 184 0.003311 c.37.1.1 116494 2vp4A 230 0.003377 2rhmA 193 0.003550 1e4yA 214 0.004286 c.37.1.1,g.41.2.1 31901,45181 2bdtA 189 0.004388 c.37.1.25 128344 1nn5A 215 0.004456 c.37.1.1 85892 1zin 217 0.004487 1zd8A 227 0.004791 1ak2A 233 0.005019 c.37.1.1,g.41.2.1 31894,45195 1knqA 175 0.005552 c.37.1.17 72786 2yvuA 186 0.005561 3be4A 217 0.005759 2pezA 179 0.006935 1zinA 217 0.007283 c.37.1.1,g.41.2.1 31915,45178 2g1kA 176 0.007994 c.37.1.2 134519 2eu8A 216 0.008707 1kdoA 227 0.008838 c.37.1.1 68478 2pt5A 168 0.00995 1ckeA 227 0.01388 c.37.1.1 31846 1rkbA 173 0.02285 c.37.1.1 111854 1viaA 175 0.02359 c.37.1.2 100754 1jjvA 206 0.02923 c.37.1.1 71698 3c8uA 208 0.03411 2grjA 192 0.03618 1m7gA 211 0.03766 c.37.1.4 78724 1zuhA 168 0.04394 1rz3A 201 0.04740 c.37.1.6 98132 1xrjA 261 0.05978 c.37.1.6 122256 2ax4A 198 0.09098 1kagA 173 0.09116 c.37.1.2 72249 1uj2A 252 0.1058 c.37.1.6 99452 3crrA 323 0.1746 1gvnB 287 0.2974 c.37.1.21 76354 1a7jA 290 0.3861 c.37.1.6 31952 2p5tB 253 0.4874 2qgnA 322 0.4911 1a7j 290 0.8988 1ly1A 181 1.682 c.37.1.1 74334 1dekA 241 2.493 c.37.1.1 31842 1ltqA 301 2.585 c.108.1.9,c.37.1.1 78208,78209 2ga8A 359 2.760 1xx6A 191 3.034 c.37.1.24,g.39.1.14 116139,116140 2f1rA 171 3.284 2orwA 184 4.804 1lv7A 257 5.092 c.37.1.20 78232 2bjvA 265 5.336 2p67A 341 5.381 1yqtA 538 5.970 2r2aA 199 6.113 1ji0A 240 6.208 c.37.1.12 71665 2hf9A 226 6.241 2cbzA 237 6.257 2nq2C 253 6.308 1bifA 469 6.843 c.37.1.7,c.60.1.4 31961,34003 2qy9A 309 7.703 2ze7A 253 7.860 1g6hA 257 9.651 c.37.1.12 60318 3b9qA 302 10.11 2qu8A 228 10.51 1bif 469 10.52 1zu4A 320 10.59 1vplA 256 10.81 c.37.1.12 113966 1z47A 355 10.88 1rj9A 304 11.02 a.24.13.1,c.37.1.10 97553,97554 2ixeA 271 11.76 1np6A 174 11.84 c.37.1.10 85954 1in4A 334 12.30 a.4.5.11,c.37.1.20 62597,62598 1sxjA 511 12.54 a.80.1.1,c.37.1.20 106081,106082 1a5t 334 12.59 2ihyA 279 12.97 2pjzA 263 13.03 1in6A 334 14.19 a.4.5.11,c.37.1.20 62601,62602 2pmkA 243 14.28 2qi9C 249 15.11 2bbsA 290 15.21 2b8tA 223 15.31 c.37.1.24,g.39.1.14 128109,128110 1odfA 290 15.95 c.37.1.6 92782 2pzeA 229 16.15 1ls1A 295 16.26 a.24.13.1,c.37.1.10 78170,78171 2it1A 362 16.28 2eyuA 261 16.28 1nijA 318 16.64 c.37.1.10,d.237.1.1 85741,85742 1tq4A 413 18.54 c.37.1.8 107201 1w5tA 412 19.66 a.4.5.11,c.37.1.20 114255,114256 1uxoA 192 20.19 c.69.1.31 108121 1mh1A 186 20.87 c.37.1.8 32002 1g6oA 330 21.60 c.37.1.11 32430 2d2eA 250 21.67 2gj8A 172 22.59 c.37.1.8 135270 2qjwA 176 24.64 2c9oA 456 25.10 1w4rA 195 25.72 1d2nA 272 25.98 c.37.1.20 32428 2fnaA 357 26.77 a.4.5.11,c.37.1.20 133809,133810 2q3hA 201 27.52 1a5tA 334 27.52 a.80.1.1,c.37.1.20 18450,32423 2vhjA 331 28.17 2a5dA 175 29.22 c.37.1.8 126172 1ky3A 182 30.66 c.37.1.8 73193 1nf3A 195 32.99 c.37.1.8 85594 1ihuA 589 33.98 c.37.1.10,c.37.1.10 62394,62395 2qmoA 220 34.59 2og2A 359 35.03 2pcjA 224 35.20 1u9iA 519 35.69 c.37.1.11,c.37.1.11 119637,119638 1g8pA 350 35.98 c.37.1.20 60376 2r44A 331 37.22 1m7bA 184 38.44 c.37.1.8 74572 2ff7A 247 38.46 c.37.1.12 133377 2cvhA 220 39.31 1j8mF 297 39.44 a.24.13.1,c.37.1.10 62742,62743 2pt7A 330 40.31 1sgwA 214 42.17 c.37.1.12 105541 1yrbA 262 42.29 c.37.1.10 123915 1l2tA 235 42.42 c.37.1.12 73514 1g41A 444 42.46 c.37.1.20 32450 2gf9A 189 43.13 1mkyA 439 43.23 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1fnnA 389 44.39 a.4.5.11,c.37.1.20 16129,32426 1sviA 195 45.28 c.37.1.8 106048 1z08A 170 45.77 c.37.1.8 124303 2bmjA 178 47.78 c.37.1.8 128797 1knxA 312 49.81 c.98.2.1,c.91.1.2 77459,77460 1kshA 186 50.28 c.37.1.8 72914 1sq5A 308 50.32 c.37.1.6 105882 2pc8A 400 50.37 1cr1A 296 50.39 c.37.1.11 32286 1zj6A 187 51.84 c.37.1.8 125145 1oxxK 353 51.86 b.40.6.3,c.37.1.12 93715,93716 2hjgA 436 54.19 1e9rA 437 55.38 c.37.1.11 64827 1g291 372 57.35 1uptA 171 59.32 c.37.1.8 99767 2q3fA 181 61.57 1cvlA 319 62.17 c.69.1.18 34786 1xjcA 169 62.21 c.37.1.10 115387 2hxsA 178 62.41 1u94A 356 62.60 c.37.1.11,d.48.1.1 107743,107744 2gcoA 201 63.45 3c5cA 187 66.24 1tadA 324 66.41 a.66.1.1,c.37.1.8 18194,32077 1l1eA 287 67.32 c.66.1.18 73454 1vg8A 207 69.11 c.37.1.8 108606 2a5jA 191 71.52 c.37.1.8 126175 2akaB 299 72.44 c.37.1.8 126914 3bosA 242 73.00 1w44A 331 73.43 c.37.1.11 114147 2ew1A 201 77.58 c.37.1.8 132446 1xtqA 177 77.58 c.37.1.8 122297 1vmaA 306 78.17 a.24.13.1,c.37.1.10 108887,108888 1fzqA 181 79.30 c.37.1.8 32060 2g6bA 180 80.83 c.37.1.8 134701 1b0uA 262 81.07 c.37.1.12 32370 2bekA 257 81.48 1wf3A 301 83.67 c.37.1.8,d.52.3.1 114574,114575 1ycdA 243 84.04 1ye8A 178 86.04 c.37.1.11 123010 1kmqA 184 88.86 c.37.1.8 84412