# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1znwA 207 1.64e-07 c.37.1.1 125412 1gky 187 1.93e-07 1kjwA 295 2.72e-07 b.34.2.1,c.37.1.1 68643,68644 2qorA 204 4.29e-07 1ex7A 186 7.08e-07 c.37.1.1 59537 1kgdA 180 7.13e-07 c.37.1.1 68582 2j41A 207 9.59e-07 2pbrA 195 6.56e-06 1s96A 219 9.00e-06 c.37.1.1 98740 2an9A 207 9.35e-06 c.37.1.1 127037 1ukzA 203 4.06e-05 c.37.1.1 31840 4tmkA 213 5.36e-05 c.37.1.1 31930 1ukz 203 9.92e-05 2c95A 196 0.000102 1gtvA 214 0.000112 c.37.1.1 70537 2ccjA 205 0.000121 1qf9A 194 0.000143 c.37.1.1 31848 2z0hA 197 0.000206 1t0hB 224 0.000224 c.37.1.1 106208 2bwjA 199 0.000226 1of1A 376 0.000278 c.37.1.1 103924 1p5zB 263 0.000409 c.37.1.1 87815 1p6xA 334 0.000426 c.37.1.1 94195 2f6rA 281 0.000614 1ki9A 192 0.000773 c.37.1.1 84404 2plrA 213 0.000982 2qt1A 207 0.001104 2vp4A 230 0.001418 2cdnA 201 0.001503 c.37.1.1 130289 1zm7A 230 0.001514 1e2kA 331 0.001704 c.37.1.1 31854 3tmkA 216 0.001709 c.37.1.1 31920 2axpA 173 0.001932 c.37.1.1 127497 1vhtA 218 0.001975 c.37.1.1 100700 1khtA 192 0.002270 c.37.1.1 84401 1nn5A 215 0.002869 c.37.1.1 85892 1y63A 184 0.002903 c.37.1.1 116494 1akyA 220 0.003645 c.37.1.1,g.41.2.1 31896,45197 3be4A 217 0.004229 1qhxA 178 0.004932 c.37.1.3 31936 2rhmA 193 0.005078 1e4yA 214 0.005257 c.37.1.1,g.41.2.1 31901,45181 2rgxA 206 0.005413 1zin 217 0.006119 2ak3A 226 0.006196 c.37.1.1,g.41.2.1 31892,45193 2iyvA 184 0.006429 c.37.1.2 137812 1kdoA 227 0.006513 c.37.1.1 68478 2yvuA 186 0.006549 2g1kA 176 0.006683 c.37.1.2 134519 1e6cA 173 0.006747 c.37.1.2 59296 1zinA 217 0.007757 c.37.1.1,g.41.2.1 31915,45178 2pezA 179 0.008476 2eu8A 216 0.01080 1viaA 175 0.01140 c.37.1.2 100754 1ak2A 233 0.01142 c.37.1.1,g.41.2.1 31894,45195 1knqA 175 0.01165 c.37.1.17 72786 2pt5A 168 0.01299 1ckeA 227 0.01332 c.37.1.1 31846 1zd8A 227 0.01391 1jjvA 206 0.01528 c.37.1.1 71698 2grjA 192 0.01616 2bdtA 189 0.01641 c.37.1.25 128344 3c8uA 208 0.01786 1m7gA 211 0.02477 c.37.1.4 78724 1zuhA 168 0.03294 1rkbA 173 0.03363 c.37.1.1 111854 1uj2A 252 0.03664 c.37.1.6 99452 1xrjA 261 0.03951 c.37.1.6 122256 2ax4A 198 0.06919 3crrA 323 0.08288 1rz3A 201 0.08642 c.37.1.6 98132 1kagA 173 0.1246 c.37.1.2 72249 1a7jA 290 0.2451 c.37.1.6 31952 2qgnA 322 0.2558 1ltqA 301 0.3645 c.108.1.9,c.37.1.1 78208,78209 1a7j 290 0.4332 1gvnB 287 0.6131 c.37.1.21 76354 1dekA 241 0.9837 c.37.1.1 31842 2p5tB 253 1.047 1ly1A 181 1.196 c.37.1.1 74334 2f1rA 171 1.544 2orwA 184 1.766 1xx6A 191 3.848 c.37.1.24,g.39.1.14 116139,116140 1sq5A 308 3.944 c.37.1.6 105882 1bifA 469 4.202 c.37.1.7,c.60.1.4 31961,34003 1lv7A 257 4.613 c.37.1.20 78232 2p67A 341 5.353 1w5tA 412 5.593 a.4.5.11,c.37.1.20 114255,114256 2ga8A 359 5.707 1vplA 256 6.343 c.37.1.12 113966 2cbzA 237 6.806 2ze7A 253 6.997 1g6hA 257 7.268 c.37.1.12 60318 2b8tA 223 7.392 c.37.1.24,g.39.1.14 128109,128110 1e9rA 437 8.189 c.37.1.11 64827 1np6A 174 8.243 c.37.1.10 85954 2pjzA 263 9.075 1ji0A 240 9.484 c.37.1.12 71665 1rj9A 304 9.670 a.24.13.1,c.37.1.10 97553,97554 1odfA 290 9.829 c.37.1.6 92782 1yqtA 538 10.38 2vhjA 331 11.86 2qy9A 309 11.96 1sgwA 214 12.36 c.37.1.12 105541 1gl6A 436 12.53 c.37.1.11 70259 2pmkA 243 12.76 1w4rA 195 12.76 1bif 469 13.22 1d2nA 272 13.60 c.37.1.20 32428 1ls1A 295 14.78 a.24.13.1,c.37.1.10 78170,78171 2fnaA 357 14.93 a.4.5.11,c.37.1.20 133809,133810 1ycdA 243 15.15 2pcjA 224 15.58 2eyuA 261 15.83 2ixeA 271 16.23 2q3hA 201 16.95 1mh1A 186 17.47 c.37.1.8 32002 1uxoA 192 17.55 c.69.1.31 108121 1l2tA 235 17.62 c.37.1.12 73514 2qi9C 249 18.22 1w44A 331 18.26 c.37.1.11 114147 2bbsA 290 18.29 2nq2C 253 18.46 2d2eA 250 18.56 2pzeA 229 19.42 2hf9A 226 20.09 1a5t 334 20.10 2ihyA 279 20.20 1nijA 318 22.64 c.37.1.10,d.237.1.1 85741,85742 1l1eA 287 23.73 c.66.1.18 73454 3c5cA 187 24.35 1z47A 355 24.81 1zu4A 320 25.57 2qjwA 176 27.31 1m7bA 184 27.37 c.37.1.8 74572 2ff7A 247 27.93 c.37.1.12 133377 2gj8A 172 27.95 c.37.1.8 135270 1u9iA 519 29.81 c.37.1.11,c.37.1.11 119637,119638 2og2A 359 30.64 1g8pA 350 30.81 c.37.1.20 60376 2bjvA 265 31.33 1ye8A 178 31.69 c.37.1.11 123010 2o2gA 223 32.02 1wcv1 257 32.09 2dpxA 174 32.47 1g291 372 32.53 2gzaA 361 34.51 1fnnA 389 35.82 a.4.5.11,c.37.1.20 16129,32426 2bekA 257 36.31 2oap1 511 38.68 2gjsA 176 38.99 c.37.1.8 135287 1g41A 444 39.16 c.37.1.20 32450 1sxjA 511 40.37 a.80.1.1,c.37.1.20 106081,106082 2qu8A 228 41.23 2afhE 289 41.83 c.37.1.10 126683 2r2aA 199 41.97 1in4A 334 42.35 a.4.5.11,c.37.1.20 62597,62598 1b0uA 262 42.64 c.37.1.12 32370 2it1A 362 44.16 1xjcA 169 44.63 c.37.1.10 115387 2r44A 331 45.36 1brt 277 46.59 1nf3A 195 46.64 c.37.1.8 85594 1tueA 212 47.30 c.37.1.20 107323 1in6A 334 49.71 a.4.5.11,c.37.1.20 62601,62602 3bosA 242 50.77 1ko7A 314 52.08 c.98.2.1,c.91.1.2 72797,72798 1ky3A 182 52.21 c.37.1.8 73193 2c9oA 456 53.48 1u94A 356 53.83 c.37.1.11,d.48.1.1 107743,107744 2rexB 197 53.84 1vmaA 306 54.51 a.24.13.1,c.37.1.10 108887,108888 1ufoA 238 55.62 c.69.1.27 99344 1xd8A 289 58.22 2qm8A 337 58.46 3b9qA 302 58.81 2a5dA 175 59.66 c.37.1.8 126172 1z2aA 168 60.28 c.37.1.8 124374 1cp2A 269 60.84 c.37.1.10 32269 2pc8A 400 61.19 1cr1A 296 61.74 c.37.1.11 32286 2hxsA 178 62.41 1jmkC 230 63.49 c.69.1.22 71747 1knxA 312 63.50 c.98.2.1,c.91.1.2 77459,77460 1oxxK 353 63.95 b.40.6.3,c.37.1.12 93715,93716 1g6oA 330 64.77 c.37.1.11 32430 1j8mF 297 64.98 a.24.13.1,c.37.1.10 62742,62743 1nlfA 279 65.41 c.37.1.11 85850 1z08A 170 66.39 c.37.1.8 124303 1x6vA 630 67.39 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2gcoA 201 68.07 2j67A 178 68.50 2c8vA 288 68.55 c.37.1.10 130128 1b6g 310 70.24 3b9pA 297 74.17 2hjgA 436 74.32 1tca 317 75.22 2qmoA 220 75.73 2gf9A 189 76.28 2q3fA 181 77.63 2pt7A 330 78.62 1kmqA 184 81.21 c.37.1.8 84412 2gk6A 624 84.36 1cvlA 319 85.03 c.69.1.18 34786 1g3qA 237 86.74 c.37.1.10 60237 1cvl 319 89.30