# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 1.20e-06 4tmkA 213 2.31e-06 c.37.1.1 31930 1znwA 207 2.78e-06 c.37.1.1 125412 2plrA 213 4.05e-06 2ccjA 205 4.83e-06 1p5zB 263 5.41e-06 c.37.1.1 87815 2qorA 204 5.58e-06 2j41A 207 5.63e-06 1z6gA 218 8.18e-06 1z8fA 228 9.87e-06 1gtvA 214 1.85e-05 c.37.1.1 70537 2z0hA 197 2.53e-05 2bwjA 199 3.01e-05 1ex7A 186 4.31e-05 c.37.1.1 59537 1kjwA 295 5.86e-05 b.34.2.1,c.37.1.1 68643,68644 1ukzA 203 9.73e-05 c.37.1.1 31840 2vp4A 230 0.000113 1s4qA 228 0.000130 c.37.1.1 98507 2cdnA 201 0.000144 c.37.1.1 130289 2c95A 196 0.000182 1ki9A 192 0.000237 c.37.1.1 84404 1qf9A 194 0.000245 c.37.1.1 31848 1of1A 376 0.000275 c.37.1.1 103924 1ukz 203 0.000286 1p6xA 334 0.000322 c.37.1.1 94195 1e2kA 331 0.000329 c.37.1.1 31854 1zm7A 230 0.000335 1oe0A 230 0.000371 c.37.1.1 92788 1vhtA 218 0.000538 c.37.1.1 100700 1t0hB 224 0.000676 c.37.1.1 106208 1t3lA 337 0.000726 b.34.2.1,c.37.1.1 106358,106359 1qhiA 366 0.000917 c.37.1.1 31860 1kdoA 227 0.001379 c.37.1.1 68478 2axpA 173 0.001668 c.37.1.1 127497 1y63A 184 0.001671 c.37.1.1 116494 1gky 187 0.002079 1ckeA 227 0.002846 c.37.1.1 31846 1qhxA 178 0.002909 c.37.1.3 31936 1khtA 192 0.003348 c.37.1.1 84401 1uj2A 252 0.003479 c.37.1.6 99452 1knqA 175 0.003500 c.37.1.17 72786 3tmkA 216 0.003713 c.37.1.1 31920 1e6cA 173 0.003814 c.37.1.2 59296 2f6rA 281 0.004404 1e4yA 214 0.005998 c.37.1.1,g.41.2.1 31901,45181 1zd8A 227 0.006613 1nksA 194 0.01046 c.37.1.1 31886 1n3bA 216 0.01078 c.37.1.1 79959 1kgdA 180 0.01094 c.37.1.1 68582 1zin 217 0.01096 2rgxA 206 0.01272 2qgnA 322 0.01318 2eu8A 216 0.01439 1p3jA 217 0.01488 c.37.1.1,g.41.2.1 94022,94023 1jjvA 206 0.01527 c.37.1.1 71698 2ax4A 198 0.01584 1ak2A 233 0.01667 c.37.1.1,g.41.2.1 31894,45195 2g1kA 176 0.02102 c.37.1.2 134519 2an9A 207 0.02409 c.37.1.1 127037 2ak3A 226 0.03023 c.37.1.1,g.41.2.1 31892,45193 1xrjA 261 0.03071 c.37.1.6 122256 2bdtA 189 0.03388 c.37.1.25 128344 1zinA 217 0.03479 c.37.1.1,g.41.2.1 31915,45178 2rhmA 193 0.03845 1akyA 220 0.04050 c.37.1.1,g.41.2.1 31896,45197 1ltqA 301 0.04495 c.108.1.9,c.37.1.1 78208,78209 3crrA 323 0.04534 1zuhA 168 0.05069 1viaA 175 0.05194 c.37.1.2 100754 2qt1A 207 0.05289 3be4A 217 0.05529 1nn5A 215 0.05530 c.37.1.1 85892 2iyvA 184 0.05539 c.37.1.2 137812 1ly1A 181 0.0999 c.37.1.1 74334 2yvuA 186 0.1079 3c8uA 208 0.1200 1rkbA 173 0.1240 c.37.1.1 111854 2pezA 179 0.1292 1kagA 173 0.1505 c.37.1.2 72249 2ze7A 253 0.1758 1s96A 219 0.2055 c.37.1.1 98740 1m7gA 211 0.2255 c.37.1.4 78724 2pt5A 168 0.4754 2grjA 192 0.5055 1sq5A 308 0.6717 c.37.1.6 105882 1dekA 241 1.351 c.37.1.1 31842 1xx6A 191 1.458 c.37.1.24,g.39.1.14 116139,116140 2ga8A 359 1.507 2f1rA 171 1.577 1a7jA 290 1.938 c.37.1.6 31952 1xjcA 169 2.304 c.37.1.10 115387 2r44A 331 2.405 2p5tB 253 2.758 1esmA 316 2.786 c.37.1.6 31953 1a7j 290 2.810 2d2eA 250 3.193 1in4A 334 3.728 a.4.5.11,c.37.1.20 62597,62598 2orwA 184 3.746 2ixeA 271 3.813 2p67A 341 4.177 2ff7A 247 4.255 c.37.1.12 133377 1z47A 355 4.854 2pmkA 243 5.140 1np6A 174 5.361 c.37.1.10 85954 2r2aA 199 5.362 1nijA 318 5.518 c.37.1.10,d.237.1.1 85741,85742 2vhjA 331 6.222 1vplA 256 6.549 c.37.1.12 113966 1rz3A 201 6.970 c.37.1.6 98132 1zu4A 320 6.994 2chgA 226 7.117 2pzeA 229 7.157 2cbzA 237 7.475 2bbsA 290 7.728 2ihyA 279 7.745 1sgwA 214 7.794 c.37.1.12 105541 1ji0A 240 7.986 c.37.1.12 71665 1l2tA 235 8.192 c.37.1.12 73514 2eyuA 261 8.281 1yqtA 538 8.566 1g6hA 257 8.752 c.37.1.12 60318 1d6jA 211 9.861 c.37.1.4 31940 1gvnB 287 10.28 c.37.1.21 76354 1ihuA 589 10.45 c.37.1.10,c.37.1.10 62394,62395 2it1A 362 10.83 2pcjA 224 10.98 3b9qA 302 11.07 1xmiA 291 11.14 c.37.1.12 115489 1sxjA 511 11.43 a.80.1.1,c.37.1.20 106081,106082 2fh5B 214 11.61 c.37.1.8 133478 2qi9C 249 11.77 1xwiA 322 12.12 1w5tA 412 12.36 a.4.5.11,c.37.1.20 114255,114256 2qy9A 309 12.40 1r0wA 286 12.46 c.37.1.12 96754 1ye8A 178 12.56 c.37.1.11 123010 1tq4A 413 13.33 c.37.1.8 107201 2qm8A 337 13.47 2gzaA 361 13.64 2cvhA 220 14.35 1a5t 334 14.71 2c8vA 288 15.15 c.37.1.10 130128 2og2A 359 15.20 1bifA 469 15.31 c.37.1.7,c.60.1.4 31961,34003 2afhE 289 15.43 c.37.1.10 126683 1g6oA 330 15.54 c.37.1.11 32430 1xd8A 289 15.57 1e9rA 437 15.59 c.37.1.11 64827 1x6vA 630 16.05 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1nsf 273 16.55 2b8tA 223 17.40 c.37.1.24,g.39.1.14 128109,128110 1in6A 334 18.52 a.4.5.11,c.37.1.20 62601,62602 1wcv1 257 18.95 2nq2C 253 19.04 1d2nA 272 19.25 c.37.1.20 32428 1sxjC 340 19.27 a.80.1.1,c.37.1.20 106085,106086 1g8yA 279 19.38 c.37.1.11 32302 2cxxA 190 20.20 c.37.1.8 131013 1oxsC 353 20.53 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 20.65 b.40.6.3,c.37.1.12 93715,93716 1lv7A 257 20.77 c.37.1.20 78232 1j8mF 297 22.55 a.24.13.1,c.37.1.10 62742,62743 1a5tA 334 22.93 a.80.1.1,c.37.1.20 18450,32423 1w44A 331 23.14 c.37.1.11 114147 1ls1A 295 23.25 a.24.13.1,c.37.1.10 78170,78171 1xbtA 193 23.93 c.37.1.24,g.39.1.14 115080,115081 2pjzA 263 24.63 1htwA 158 24.94 c.37.1.18 71083 2gdjA 264 25.22 c.37.1.11 135018 1njgA 250 26.29 c.37.1.20 85785 2reb 352 26.39 1wf3A 301 27.08 c.37.1.8,d.52.3.1 114574,114575 1w78A 422 27.45 2px0A 296 27.53 1vmaA 306 27.90 a.24.13.1,c.37.1.10 108887,108888 1t9hA 307 28.46 b.40.4.5,c.37.1.8 112358,112359 1sxjE 354 28.75 a.80.1.1,c.37.1.20 106089,106090 1b0uA 262 29.60 c.37.1.12 32370 1rj9A 304 30.23 a.24.13.1,c.37.1.10 97553,97554 1cp2A 269 30.27 c.37.1.10 32269 1xewX 182 30.39 c.37.1.12 115235 2pt7A 330 30.54 2p65A 187 30.78 3bs4A 260 31.34 1tq6A 413 31.56 c.37.1.8 107202 1jx2B 315 32.09 c.37.1.8 67404 2ffqA 171 32.18 2z83A 459 32.94 1svmA 377 34.65 c.37.1.20 112126 1tx4B 178 35.68 c.37.1.8 32045 1nf3A 195 35.69 c.37.1.8 85594 2akaB 299 36.46 c.37.1.8 126914 1g291 372 38.16 1knxA 312 39.12 c.98.2.1,c.91.1.2 77459,77460 3b9pA 297 39.34 2r6fA 972 39.59 1kmqA 184 39.86 c.37.1.8 84412 2b8wA 328 40.15 1pujA 282 40.34 c.37.1.8 88294 1yrbA 262 41.63 c.37.1.10 123915 2fnaA 357 42.78 a.4.5.11,c.37.1.20 133809,133810 1g3qA 237 43.84 c.37.1.10 60237 1jbkA 195 47.77 c.37.1.20 71631 1qhlA 227 48.45 c.37.1.12 32382 2gxaA 274 49.18 1us8A 147 50.03 c.37.1.12 99859 1g41A 444 50.42 c.37.1.20 32450 2bekA 257 51.11 1tueA 212 51.66 c.37.1.20 107323 2g6bA 180 52.11 c.37.1.8 134701 2rexB 197 57.25 1cr1A 296 60.39 c.37.1.11 32286 1w1wA 430 60.98 c.37.1.12 114080 1z2aA 168 62.89 c.37.1.8 124374 1tca 317 63.65 2g1uA 155 64.85 1g8fA 511 66.24 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1nlfA 279 66.95 c.37.1.11 85850 1bif 469 67.11 1lnzA 342 67.92 b.117.1.1,c.37.1.8 78112,78113 2gjsA 176 68.45 c.37.1.8 135287 1id1A 153 68.45 c.2.1.9 62286 2dykA 161 70.74 1u9iA 519 71.14 c.37.1.11,c.37.1.11 119637,119638 1xp8A 366 73.73 c.37.1.11,d.48.1.1 115735,115736 1egaA 301 74.04 c.37.1.8,d.52.3.1 32150,38836 2c2hA 192 74.25 c.37.1.8 129668 1r4aA 165 75.08 c.37.1.8 96986 1w4rA 195 76.00 1m7bA 184 79.50 c.37.1.8 74572 2qu8A 228 80.47 2h17A 181 81.05 2a5yB 549 81.23 1mh1 186 81.33 1u0jA 267 82.11 c.37.1.20 107546 1lw7A 365 82.33 c.26.1.3,c.37.1.1 74295,74296 3rabA 169 82.60 c.37.1.8 32018 1yzqA 170 83.49 c.37.1.8 124286 2hxsA 178 83.77 2yv5A 302 85.17 1h65A 270 85.27 c.37.1.8 65640 2dr3A 247 87.77 2dpxA 174 87.98 2jdiD 482 88.30 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 2qmoA 220 89.47 1f2tA 149 89.52 c.37.1.12 32373