# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 1.25e-07 1znwA 207 2.58e-07 c.37.1.1 125412 2plrA 213 4.09e-07 2qorA 204 6.18e-07 2j41A 207 6.28e-07 1z6gA 218 7.56e-07 4tmkA 213 8.13e-07 c.37.1.1 31930 1z8fA 228 1.56e-06 1p5zB 263 1.71e-06 c.37.1.1 87815 2bwjA 199 1.87e-06 2ccjA 205 2.39e-06 1ukzA 203 5.71e-06 c.37.1.1 31840 2z0hA 197 6.73e-06 1gtvA 214 1.06e-05 c.37.1.1 70537 2c95A 196 1.25e-05 1s4qA 228 1.51e-05 c.37.1.1 98507 1ex7A 186 1.62e-05 c.37.1.1 59537 2cdnA 201 1.67e-05 c.37.1.1 130289 1ukz 203 3.05e-05 1kjwA 295 4.20e-05 b.34.2.1,c.37.1.1 68643,68644 2vp4A 230 6.40e-05 1qf9A 194 6.85e-05 c.37.1.1 31848 1ki9A 192 7.84e-05 c.37.1.1 84404 1vhtA 218 0.000116 c.37.1.1 100700 1oe0A 230 0.000143 c.37.1.1 92788 1y63A 184 0.000145 c.37.1.1 116494 2axpA 173 0.000174 c.37.1.1 127497 1e2kA 331 0.000214 c.37.1.1 31854 1t3lA 337 0.000233 b.34.2.1,c.37.1.1 106358,106359 1p6xA 334 0.000244 c.37.1.1 94195 1of1A 376 0.000319 c.37.1.1 103924 1zm7A 230 0.000356 1gky 187 0.000369 1t0hB 224 0.000480 c.37.1.1 106208 1e6cA 173 0.000518 c.37.1.2 59296 1qhiA 366 0.000754 c.37.1.1 31860 1zd8A 227 0.000768 2f6rA 281 0.000833 1qhxA 178 0.000854 c.37.1.3 31936 2eu8A 216 0.001258 3tmkA 216 0.001323 c.37.1.1 31920 1kdoA 227 0.001512 c.37.1.1 68478 1ak2A 233 0.001856 c.37.1.1,g.41.2.1 31894,45195 2rgxA 206 0.001858 1knqA 175 0.001950 c.37.1.17 72786 1zinA 217 0.001983 c.37.1.1,g.41.2.1 31915,45178 1xrjA 261 0.001983 c.37.1.6 122256 1p3jA 217 0.002028 c.37.1.1,g.41.2.1 94022,94023 1n3bA 216 0.002121 c.37.1.1 79959 1zin 217 0.002394 1e4yA 214 0.002489 c.37.1.1,g.41.2.1 31901,45181 1nksA 194 0.002638 c.37.1.1 31886 2ax4A 198 0.002698 2an9A 207 0.003384 c.37.1.1 127037 1ckeA 227 0.004067 c.37.1.1 31846 2bdtA 189 0.004117 c.37.1.25 128344 1uj2A 252 0.004346 c.37.1.6 99452 2ak3A 226 0.004873 c.37.1.1,g.41.2.1 31892,45193 1nn5A 215 0.005494 c.37.1.1 85892 1akyA 220 0.005743 c.37.1.1,g.41.2.1 31896,45197 2g1kA 176 0.006227 c.37.1.2 134519 2qgnA 322 0.007605 1jjvA 206 0.007876 c.37.1.1 71698 1kgdA 180 0.008199 c.37.1.1 68582 1khtA 192 0.009009 c.37.1.1 84401 3be4A 217 0.009875 2iyvA 184 0.01002 c.37.1.2 137812 3crrA 323 0.01267 1zuhA 168 0.01441 2qt1A 207 0.01554 2rhmA 193 0.01665 1kagA 173 0.01698 c.37.1.2 72249 2yvuA 186 0.01978 1s96A 219 0.02474 c.37.1.1 98740 1viaA 175 0.02732 c.37.1.2 100754 3c8uA 208 0.03406 1rkbA 173 0.03603 c.37.1.1 111854 1m7gA 211 0.03737 c.37.1.4 78724 2pezA 179 0.04236 2pt5A 168 0.05219 1ltqA 301 0.07757 c.108.1.9,c.37.1.1 78208,78209 2grjA 192 0.2038 2ga8A 359 0.2494 1ly1A 181 0.2509 c.37.1.1 74334 1sq5A 308 0.5890 c.37.1.6 105882 2ze7A 253 0.8856 1dekA 241 1.441 c.37.1.1 31842 2f1rA 171 1.649 1a7jA 290 1.807 c.37.1.6 31952 1esmA 316 2.435 c.37.1.6 31953 1rz3A 201 2.593 c.37.1.6 98132 2p67A 341 3.012 2p5tB 253 3.309 2r44A 331 3.549 1a7j 290 3.806 2d2eA 250 4.605 1nijA 318 4.864 c.37.1.10,d.237.1.1 85741,85742 1xx6A 191 4.949 c.37.1.24,g.39.1.14 116139,116140 1gvnB 287 5.051 c.37.1.21 76354 1np6A 174 5.825 c.37.1.10 85954 2fh5B 214 6.785 c.37.1.8 133478 1z47A 355 7.153 1d6jA 211 7.316 c.37.1.4 31940 2cbzA 237 7.351 2chgA 226 7.471 2ihyA 279 7.491 1g6oA 330 8.045 c.37.1.11 32430 1xmiA 291 8.571 c.37.1.12 115489 2vhjA 331 8.589 1sxjA 511 9.152 a.80.1.1,c.37.1.20 106081,106082 2bbsA 290 9.201 1xjcA 169 9.736 c.37.1.10 115387 1r0wA 286 9.769 c.37.1.12 96754 2pzeA 229 9.831 1yqtA 538 11.24 1in4A 334 11.94 a.4.5.11,c.37.1.20 62597,62598 2it1A 362 11.99 2reb 352 12.15 2qi9C 249 12.61 1ihuA 589 12.77 c.37.1.10,c.37.1.10 62394,62395 1sgwA 214 13.69 c.37.1.12 105541 1w5tA 412 13.90 a.4.5.11,c.37.1.20 114255,114256 1vplA 256 14.47 c.37.1.12 113966 1e9rA 437 14.54 c.37.1.11 64827 1x6vA 630 14.69 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2eyuA 261 14.86 1jx2B 315 15.31 c.37.1.8 67404 2gzaA 361 15.42 1ji0A 240 15.68 c.37.1.12 71665 1nsf 273 15.92 1xwiA 322 16.07 2orwA 184 16.53 2ff7A 247 16.83 c.37.1.12 133377 2ixeA 271 16.87 2fnaA 357 17.19 a.4.5.11,c.37.1.20 133809,133810 2pcjA 224 18.20 2dykA 161 18.32 2qm8A 337 18.75 2c8vA 288 19.70 c.37.1.10 130128 1ye8A 178 21.76 c.37.1.11 123010 1g41A 444 22.05 c.37.1.20 32450 1nf3A 195 22.61 c.37.1.8 85594 1egaA 301 23.73 c.37.1.8,d.52.3.1 32150,38836 1d2nA 272 23.88 c.37.1.20 32428 1g6hA 257 24.29 c.37.1.12 60318 2cvhA 220 24.40 3b9qA 302 24.61 1g8yA 279 24.73 c.37.1.11 32302 1in6A 334 24.80 a.4.5.11,c.37.1.20 62601,62602 2p65A 187 25.01 3b9pA 297 25.81 2pjzA 263 26.06 2pmkA 243 26.32 2pt7A 330 26.45 1rj9A 304 28.16 a.24.13.1,c.37.1.10 97553,97554 1qhlA 227 28.32 c.37.1.12 32382 2nq2C 253 29.05 2b8tA 223 29.75 c.37.1.24,g.39.1.14 128109,128110 1a5t 334 30.07 1htwA 158 32.16 c.37.1.18 71083 1mvwA 840 32.27 i.15.1.1 79523 2rexB 197 32.77 1yrbA 262 34.26 c.37.1.10 123915 2g6bA 180 35.53 c.37.1.8 134701 1t9hA 307 35.90 b.40.4.5,c.37.1.8 112358,112359 1w44A 331 35.98 c.37.1.11 114147 1g8fA 511 36.07 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2px0A 296 37.51 1lnzA 342 39.89 b.117.1.1,c.37.1.8 78112,78113 1ycdA 243 40.61 1b0uA 262 40.97 c.37.1.12 32370 2r2aA 199 40.98 1oxsC 353 41.01 b.40.6.3,c.37.1.12 87519,87520 1kmqA 184 41.05 c.37.1.8 84412 2dkhA 639 43.27 1jbkA 195 43.88 c.37.1.20 71631 2dr3A 247 44.68 1zu4A 320 45.15 2qptA 550 45.16 1tq4A 413 45.20 c.37.1.8 107201 2f9lA 199 45.24 c.37.1.8 133166 1odfA 290 45.42 c.37.1.6 92782 2cxxA 190 45.49 c.37.1.8 131013 1wf3A 301 45.97 c.37.1.8,d.52.3.1 114574,114575 1tx4B 178 46.38 c.37.1.8 32045 2gf9A 189 47.97 1lv7A 257 48.54 c.37.1.20 78232 1oxxK 353 49.05 b.40.6.3,c.37.1.12 93715,93716 1sxjC 340 49.41 a.80.1.1,c.37.1.20 106085,106086 2akaB 299 49.74 c.37.1.8 126914 2gdjA 264 50.14 c.37.1.11 135018 2ffqA 171 50.98 1lvk 762 51.74 3rabA 169 51.96 c.37.1.8 32018 1z2aA 168 52.14 c.37.1.8 124374 1j8mF 297 52.56 a.24.13.1,c.37.1.10 62742,62743 3bosA 242 52.72 2hxsA 178 56.15 1cp2A 269 56.75 c.37.1.10 32269 1sxjE 354 57.20 a.80.1.1,c.37.1.20 106089,106090 1r2qA 170 57.78 c.37.1.8 96874 1l2tA 235 58.12 c.37.1.12 73514 2ce2X 166 58.27 1ny6A 267 58.73 c.37.1.20 92321 1z0jA 170 61.26 c.37.1.8 124319 1wmsA 177 63.07 c.37.1.8 109414 1m7bA 184 64.51 c.37.1.8 74572 1bifA 469 65.81 c.37.1.7,c.60.1.4 31961,34003 1a5tA 334 68.06 a.80.1.1,c.37.1.20 18450,32423 1z06A 189 69.08 c.37.1.8 124301 2bmeA 186 70.52 c.37.1.8 128790 1w7jA 795 71.02 b.34.3.1,c.37.1.9 120688,120689 1mkyA 439 71.07 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2afhE 289 73.11 c.37.1.10 126683 1tq6A 413 73.40 c.37.1.8 107202 1wcv1 257 74.52 2dpxA 174 74.96 1vg8A 207 75.10 c.37.1.8 108606 2h17A 181 75.68 2q3fA 181 76.35 1nrjB 218 77.43 c.37.1.8 86125 2a9iA 113 78.15 2bkhA 814 79.24 3bijA 285 81.31 1oixA 191 81.59 c.37.1.8 118710 1kaoA 167 82.29 c.37.1.8 32014 2qu8A 228 82.66 1xtqA 177 83.48 c.37.1.8 122297 2qy9A 309 85.08 1knxA 312 85.80 c.98.2.1,c.91.1.2 77459,77460 1g38A 393 85.93 c.66.1.27,d.287.1.1 111567,111568 2erxA 172 86.70 c.37.1.8 132304 2og2A 359 87.95 1sviA 195 88.15 c.37.1.8 106048 2v26A 784 88.77