# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 6.70e-07 4tmkA 213 1.68e-06 c.37.1.1 31930 1znwA 207 2.32e-06 c.37.1.1 125412 2plrA 213 3.10e-06 2ccjA 205 3.88e-06 2j41A 207 4.19e-06 1p5zB 263 4.76e-06 c.37.1.1 87815 2qorA 204 5.87e-06 1z6gA 218 8.34e-06 2z0hA 197 1.18e-05 1z8fA 228 1.47e-05 1gtvA 214 1.59e-05 c.37.1.1 70537 2bwjA 199 2.13e-05 1kjwA 295 3.98e-05 b.34.2.1,c.37.1.1 68643,68644 1ex7A 186 4.15e-05 c.37.1.1 59537 1ukzA 203 6.29e-05 c.37.1.1 31840 1s4qA 228 8.69e-05 c.37.1.1 98507 2vp4A 230 9.22e-05 1ki9A 192 0.000107 c.37.1.1 84404 2cdnA 201 0.000126 c.37.1.1 130289 2c95A 196 0.000135 1p6xA 334 0.000249 c.37.1.1 94195 1of1A 376 0.000268 c.37.1.1 103924 1zm7A 230 0.000325 1e2kA 331 0.000353 c.37.1.1 31854 1t3lA 337 0.000371 b.34.2.1,c.37.1.1 106358,106359 1qf9A 194 0.000392 c.37.1.1 31848 1ukz 203 0.000422 1t0hB 224 0.000438 c.37.1.1 106208 1oe0A 230 0.000456 c.37.1.1 92788 1vhtA 218 0.000613 c.37.1.1 100700 1qhiA 366 0.000968 c.37.1.1 31860 1y63A 184 0.001094 c.37.1.1 116494 2axpA 173 0.001367 c.37.1.1 127497 3tmkA 216 0.001882 c.37.1.1 31920 1qhxA 178 0.002064 c.37.1.3 31936 1gky 187 0.002342 1ckeA 227 0.003092 c.37.1.1 31846 1e6cA 173 0.003272 c.37.1.2 59296 1khtA 192 0.003344 c.37.1.1 84401 1kdoA 227 0.004105 c.37.1.1 68478 1zd8A 227 0.004363 1uj2A 252 0.004605 c.37.1.6 99452 2f6rA 281 0.004859 1e4yA 214 0.006173 c.37.1.1,g.41.2.1 31901,45181 1xrjA 261 0.006650 c.37.1.6 122256 1knqA 175 0.006738 c.37.1.17 72786 1n3bA 216 0.007206 c.37.1.1 79959 2rgxA 206 0.008311 1nksA 194 0.009339 c.37.1.1 31886 2eu8A 216 0.009442 1kgdA 180 0.01004 c.37.1.1 68582 1ak2A 233 0.01022 c.37.1.1,g.41.2.1 31894,45195 2qgnA 322 0.01165 1jjvA 206 0.01539 c.37.1.1 71698 2g1kA 176 0.01663 c.37.1.2 134519 1zin 217 0.01664 1p3jA 217 0.01777 c.37.1.1,g.41.2.1 94022,94023 1zinA 217 0.01907 c.37.1.1,g.41.2.1 31915,45178 2an9A 207 0.02017 c.37.1.1 127037 2ak3A 226 0.02196 c.37.1.1,g.41.2.1 31892,45193 3be4A 217 0.02304 1akyA 220 0.02345 c.37.1.1,g.41.2.1 31896,45197 2iyvA 184 0.02418 c.37.1.2 137812 2ax4A 198 0.02451 2qt1A 207 0.02844 1nn5A 215 0.03625 c.37.1.1 85892 3crrA 323 0.04099 1zuhA 168 0.04243 1viaA 175 0.04716 c.37.1.2 100754 2rhmA 193 0.05414 1ltqA 301 0.05632 c.108.1.9,c.37.1.1 78208,78209 2bdtA 189 0.05832 c.37.1.25 128344 1kagA 173 0.07459 c.37.1.2 72249 3c8uA 208 0.1132 2pezA 179 0.1181 2yvuA 186 0.1327 1m7gA 211 0.1382 c.37.1.4 78724 1rkbA 173 0.1850 c.37.1.1 111854 1s96A 219 0.2431 c.37.1.1 98740 2ze7A 253 0.2816 2grjA 192 0.3332 2pt5A 168 0.4160 1ly1A 181 0.4432 c.37.1.1 74334 1sq5A 308 0.4671 c.37.1.6 105882 2ga8A 359 0.7254 1dekA 241 0.9908 c.37.1.1 31842 1esmA 316 1.385 c.37.1.6 31953 1xx6A 191 1.481 c.37.1.24,g.39.1.14 116139,116140 2f1rA 171 1.658 1xjcA 169 1.666 c.37.1.10 115387 2p5tB 253 2.259 2orwA 184 2.758 2r44A 331 3.195 1a7jA 290 3.385 c.37.1.6 31952 1a7j 290 3.444 1nijA 318 3.845 c.37.1.10,d.237.1.1 85741,85742 2p67A 341 4.229 2ff7A 247 4.473 c.37.1.12 133377 2d2eA 250 4.484 2bbsA 290 4.730 1gvnB 287 4.776 c.37.1.21 76354 1in4A 334 5.033 a.4.5.11,c.37.1.20 62597,62598 2ixeA 271 5.140 1np6A 174 5.335 c.37.1.10 85954 1yqtA 538 5.483 1vplA 256 5.941 c.37.1.12 113966 1z47A 355 5.965 1rz3A 201 6.139 c.37.1.6 98132 2qi9C 249 6.743 1xmiA 291 6.819 c.37.1.12 115489 2it1A 362 7.050 2r2aA 199 7.168 2vhjA 331 7.258 2fh5B 214 7.312 c.37.1.8 133478 2pzeA 229 7.951 2pmkA 243 8.180 2ihyA 279 8.522 2cbzA 237 8.660 1sgwA 214 8.718 c.37.1.12 105541 1r0wA 286 8.833 c.37.1.12 96754 1ji0A 240 8.982 c.37.1.12 71665 2chgA 226 8.995 2eyuA 261 9.901 1ihuA 589 10.08 c.37.1.10,c.37.1.10 62394,62395 1g8yA 279 11.49 c.37.1.11 32302 1l2tA 235 12.18 c.37.1.12 73514 1zu4A 320 12.71 1sxjA 511 12.92 a.80.1.1,c.37.1.20 106081,106082 1e9rA 437 13.41 c.37.1.11 64827 2gzaA 361 13.42 1w5tA 412 13.92 a.4.5.11,c.37.1.20 114255,114256 2nq2C 253 13.97 1a5t 334 13.99 2c8vA 288 14.08 c.37.1.10 130128 1xwiA 322 14.09 3b9qA 302 14.13 1g6hA 257 14.54 c.37.1.12 60318 1wcv1 257 14.74 1jx2B 315 14.84 c.37.1.8 67404 1xewX 182 16.32 c.37.1.12 115235 1xbtA 193 16.33 c.37.1.24,g.39.1.14 115080,115081 2pcjA 224 16.64 2b8tA 223 16.82 c.37.1.24,g.39.1.14 128109,128110 2qm8A 337 16.84 1ye8A 178 16.90 c.37.1.11 123010 1x6vA 630 17.35 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2afhE 289 17.45 c.37.1.10 126683 1d6jA 211 17.61 c.37.1.4 31940 2cvhA 220 17.86 2og2A 359 17.98 1tq4A 413 18.08 c.37.1.8 107201 1tq6A 413 18.87 c.37.1.8 107202 1g6oA 330 19.43 c.37.1.11 32430 2qy9A 309 20.20 2gdjA 264 20.35 c.37.1.11 135018 1w44A 331 22.05 c.37.1.11 114147 2pt7A 330 22.40 1sxjE 354 22.46 a.80.1.1,c.37.1.20 106089,106090 2cxxA 190 22.56 c.37.1.8 131013 2z83A 459 22.80 2ffqA 171 22.94 1xd8A 289 24.03 1lv7A 257 24.79 c.37.1.20 78232 1cp2A 269 25.57 c.37.1.10 32269 1a5tA 334 25.76 a.80.1.1,c.37.1.20 18450,32423 2pjzA 263 26.16 1nf3A 195 26.51 c.37.1.8 85594 1t9hA 307 26.59 b.40.4.5,c.37.1.8 112358,112359 1sxjC 340 26.97 a.80.1.1,c.37.1.20 106085,106086 2px0A 296 27.37 1j8mF 297 27.88 a.24.13.1,c.37.1.10 62742,62743 2dr3A 247 29.51 1b0uA 262 30.29 c.37.1.12 32370 1g3qA 237 30.54 c.37.1.10 60237 1in6A 334 30.68 a.4.5.11,c.37.1.20 62601,62602 2gjsA 176 31.20 c.37.1.8 135287 1bifA 469 31.32 c.37.1.7,c.60.1.4 31961,34003 1kmqA 184 31.39 c.37.1.8 84412 1wf3A 301 31.83 c.37.1.8,d.52.3.1 114574,114575 2reb 352 32.81 2akaB 299 32.87 c.37.1.8 126914 2rexB 197 32.88 1us8A 147 33.38 c.37.1.12 99859 1oxsC 353 33.96 b.40.6.3,c.37.1.12 87519,87520 1htwA 158 34.53 c.37.1.18 71083 2g6bA 180 35.28 c.37.1.8 134701 1lnzA 342 35.89 b.117.1.1,c.37.1.8 78112,78113 1njgA 250 36.44 c.37.1.20 85785 1rj9A 304 36.75 a.24.13.1,c.37.1.10 97553,97554 1oxxK 353 37.95 b.40.6.3,c.37.1.12 93715,93716 2dpxA 174 38.83 1nsf 273 39.79 1ls1A 295 41.14 a.24.13.1,c.37.1.10 78170,78171 3bs4A 260 41.54 3b9pA 297 43.91 2bekA 257 45.11 2fnaA 357 45.57 a.4.5.11,c.37.1.20 133809,133810 1g41A 444 45.92 c.37.1.20 32450 3bosA 242 47.10 2qu8A 228 48.66 1svmA 377 49.10 c.37.1.20 112126 1tx4B 178 51.10 c.37.1.8 32045 2p65A 187 51.26 1jbkA 195 52.97 c.37.1.20 71631 1g8fA 511 53.15 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1w1wA 430 53.46 c.37.1.12 114080 1knxA 312 53.59 c.98.2.1,c.91.1.2 77459,77460 1g291 372 53.71 2gxaA 274 54.48 1m7bA 184 54.99 c.37.1.8 74572 2b8wA 328 55.14 1u9iA 519 55.36 c.37.1.11,c.37.1.11 119637,119638 1nlfA 279 56.66 c.37.1.11 85850 1z0jA 170 57.06 c.37.1.8 124319 1yrbA 262 57.26 c.37.1.10 123915 1qhlA 227 57.45 c.37.1.12 32382 1z2aA 168 57.56 c.37.1.8 124374 1d2nA 272 58.10 c.37.1.20 32428 2dykA 161 58.55 2hxsA 178 58.81 2rebA 352 63.56 c.37.1.11,d.48.1.1 32282,38767 1odfA 290 64.53 c.37.1.6 92782 1przA 252 66.29 d.265.1.3 95064 2h17A 181 67.71 1yzqA 170 69.01 c.37.1.8 124286 2r6fA 972 71.27 1w9iA 770 74.21 1tueA 212 74.34 c.37.1.20 107323 1vcoA 550 75.79 c.23.16.1,c.37.1.10 108508,108509 2akaA 776 77.13 1kskA 234 77.77 d.66.1.5,d.265.1.3 72920,90389 1f2tA 149 78.94 c.37.1.12 32373 1n0wA 243 80.13 c.37.1.11 79772 2f9lA 199 80.85 c.37.1.8 133166 1vmaA 306 81.00 a.24.13.1,c.37.1.10 108887,108888 2c2hA 192 83.40 c.37.1.8 129668 1ny6A 267 83.62 c.37.1.20 92321 1byi 224 84.99 1egaA 301 88.95 c.37.1.8,d.52.3.1 32150,38836 3bh0A 315 89.63