# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 1.15e-06 1znwA 207 1.64e-06 c.37.1.1 125412 4tmkA 213 1.97e-06 c.37.1.1 31930 2j41A 207 2.87e-06 2qorA 204 3.88e-06 1p5zB 263 3.99e-06 c.37.1.1 87815 2plrA 213 4.82e-06 2ccjA 205 5.49e-06 1z6gA 218 5.82e-06 1z8fA 228 7.80e-06 1gtvA 214 1.60e-05 c.37.1.1 70537 2bwjA 199 1.92e-05 2z0hA 197 2.19e-05 1kjwA 295 3.15e-05 b.34.2.1,c.37.1.1 68643,68644 1ex7A 186 5.27e-05 c.37.1.1 59537 1ukzA 203 6.34e-05 c.37.1.1 31840 1s4qA 228 7.05e-05 c.37.1.1 98507 2cdnA 201 7.93e-05 c.37.1.1 130289 2vp4A 230 8.42e-05 2c95A 196 0.000103 1ki9A 192 0.000195 c.37.1.1 84404 1of1A 376 0.000256 c.37.1.1 103924 1zm7A 230 0.000259 1oe0A 230 0.000299 c.37.1.1 92788 1p6xA 334 0.000323 c.37.1.1 94195 1e2kA 331 0.000333 c.37.1.1 31854 1qf9A 194 0.000335 c.37.1.1 31848 1ukz 203 0.000348 1t0hB 224 0.000428 c.37.1.1 106208 1t3lA 337 0.000438 b.34.2.1,c.37.1.1 106358,106359 1vhtA 218 0.000449 c.37.1.1 100700 1qhiA 366 0.000779 c.37.1.1 31860 2axpA 173 0.001402 c.37.1.1 127497 1y63A 184 0.001520 c.37.1.1 116494 3tmkA 216 0.001945 c.37.1.1 31920 1gky 187 0.002326 1qhxA 178 0.002402 c.37.1.3 31936 1kdoA 227 0.002415 c.37.1.1 68478 1ckeA 227 0.002867 c.37.1.1 31846 1khtA 192 0.002964 c.37.1.1 84401 1knqA 175 0.003628 c.37.1.17 72786 1uj2A 252 0.003816 c.37.1.6 99452 1zd8A 227 0.004167 1e4yA 214 0.004173 c.37.1.1,g.41.2.1 31901,45181 2f6rA 281 0.004413 1e6cA 173 0.005479 c.37.1.2 59296 1xrjA 261 0.005654 c.37.1.6 122256 1kgdA 180 0.006383 c.37.1.1 68582 2eu8A 216 0.007247 1n3bA 216 0.007600 c.37.1.1 79959 2rgxA 206 0.007775 1zin 217 0.008513 1ak2A 233 0.009465 c.37.1.1,g.41.2.1 31894,45195 2qgnA 322 0.009540 2an9A 207 0.01000 c.37.1.1 127037 2g1kA 176 0.01138 c.37.1.2 134519 1p3jA 217 0.01190 c.37.1.1,g.41.2.1 94022,94023 1nksA 194 0.01305 c.37.1.1 31886 1jjvA 206 0.01433 c.37.1.1 71698 2ak3A 226 0.01576 c.37.1.1,g.41.2.1 31892,45193 1zinA 217 0.01788 c.37.1.1,g.41.2.1 31915,45178 1akyA 220 0.01871 c.37.1.1,g.41.2.1 31896,45197 2ax4A 198 0.01969 3be4A 217 0.02769 2iyvA 184 0.02943 c.37.1.2 137812 1nn5A 215 0.03538 c.37.1.1 85892 2qt1A 207 0.03624 3crrA 323 0.03690 1zuhA 168 0.04300 1viaA 175 0.04947 c.37.1.2 100754 1ltqA 301 0.05612 c.108.1.9,c.37.1.1 78208,78209 2bdtA 189 0.05855 c.37.1.25 128344 2rhmA 193 0.06215 1kagA 173 0.06695 c.37.1.2 72249 3c8uA 208 0.06699 1s96A 219 0.1076 c.37.1.1 98740 1rkbA 173 0.1149 c.37.1.1 111854 2yvuA 186 0.1233 2pezA 179 0.1243 1m7gA 211 0.2326 c.37.1.4 78724 2ze7A 253 0.2881 2grjA 192 0.3042 1ly1A 181 0.3091 c.37.1.1 74334 2pt5A 168 0.3366 1sq5A 308 0.5264 c.37.1.6 105882 2ga8A 359 0.7702 1xx6A 191 1.160 c.37.1.24,g.39.1.14 116139,116140 2f1rA 171 1.220 2orwA 184 1.496 1dekA 241 1.619 c.37.1.1 31842 1a7jA 290 1.702 c.37.1.6 31952 1esmA 316 2.190 c.37.1.6 31953 1xjcA 169 2.308 c.37.1.10 115387 1a7j 290 2.492 2p5tB 253 2.583 2r44A 331 2.713 2d2eA 250 3.455 1z47A 355 3.495 1nijA 318 3.661 c.37.1.10,d.237.1.1 85741,85742 2p67A 341 4.066 1np6A 174 4.076 c.37.1.10 85954 2qi9C 249 4.732 1gvnB 287 4.751 c.37.1.21 76354 1in4A 334 5.033 a.4.5.11,c.37.1.20 62597,62598 2r2aA 199 5.152 2ixeA 271 5.231 2ihyA 279 5.474 2ff7A 247 5.724 c.37.1.12 133377 1l2tA 235 5.752 c.37.1.12 73514 2chgA 226 5.761 2it1A 362 6.009 1rz3A 201 6.321 c.37.1.6 98132 1sgwA 214 6.671 c.37.1.12 105541 1vplA 256 6.843 c.37.1.12 113966 2vhjA 331 7.066 1ji0A 240 7.137 c.37.1.12 71665 1e9rA 437 7.228 c.37.1.11 64827 2bbsA 290 7.599 2eyuA 261 7.622 1yqtA 538 7.637 2pmkA 243 7.999 1w5tA 412 8.025 a.4.5.11,c.37.1.20 114255,114256 1sxjA 511 8.093 a.80.1.1,c.37.1.20 106081,106082 2pcjA 224 8.726 2pzeA 229 8.733 1r0wA 286 9.199 c.37.1.12 96754 1zu4A 320 9.230 1g6hA 257 9.276 c.37.1.12 60318 2qm8A 337 9.869 2cbzA 237 9.96 1xmiA 291 9.96 c.37.1.12 115489 1ihuA 589 10.08 c.37.1.10,c.37.1.10 62394,62395 2c8vA 288 10.40 c.37.1.10 130128 1ye8A 178 10.55 c.37.1.11 123010 1sxjE 354 10.91 a.80.1.1,c.37.1.20 106089,106090 2fh5B 214 11.05 c.37.1.8 133478 3b9qA 302 12.38 1wcv1 257 13.29 2b8tA 223 13.30 c.37.1.24,g.39.1.14 128109,128110 1d6jA 211 14.06 c.37.1.4 31940 2reb 352 14.29 2gzaA 361 14.56 1g6oA 330 14.66 c.37.1.11 32430 1a5t 334 15.48 2cvhA 220 15.73 1g8yA 279 16.58 c.37.1.11 32302 2afhE 289 16.60 c.37.1.10 126683 2z83A 459 16.63 2nq2C 253 16.87 1sxjC 340 17.03 a.80.1.1,c.37.1.20 106085,106086 1xewX 182 17.07 c.37.1.12 115235 1tq4A 413 17.44 c.37.1.8 107201 2og2A 359 17.76 2qy9A 309 18.12 1xd8A 289 19.88 1in6A 334 20.43 a.4.5.11,c.37.1.20 62601,62602 1us8A 147 21.16 c.37.1.12 99859 1xbtA 193 21.24 c.37.1.24,g.39.1.14 115080,115081 1cp2A 269 21.90 c.37.1.10 32269 1nsf 273 22.98 1w44A 331 23.40 c.37.1.11 114147 1knxA 312 23.41 c.98.2.1,c.91.1.2 77459,77460 1lnzA 342 23.57 b.117.1.1,c.37.1.8 78112,78113 2pjzA 263 24.01 1t9hA 307 24.18 b.40.4.5,c.37.1.8 112358,112359 2px0A 296 24.34 1oxsC 353 24.47 b.40.6.3,c.37.1.12 87519,87520 1njgA 250 24.62 c.37.1.20 85785 2r6fA 972 24.69 1jx2B 315 26.32 c.37.1.8 67404 1g41A 444 26.70 c.37.1.20 32450 1ls1A 295 26.81 a.24.13.1,c.37.1.10 78170,78171 1a5tA 334 27.20 a.80.1.1,c.37.1.20 18450,32423 1x6vA 630 27.20 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1xwiA 322 27.52 2cxxA 190 27.63 c.37.1.8 131013 1tx4B 178 27.64 c.37.1.8 32045 1oxxK 353 27.75 b.40.6.3,c.37.1.12 93715,93716 1htwA 158 27.89 c.37.1.18 71083 1kmqA 184 28.97 c.37.1.8 84412 1b0uA 262 29.09 c.37.1.12 32370 2pt7A 330 29.50 2fnaA 357 29.85 a.4.5.11,c.37.1.20 133809,133810 1nf3A 195 31.49 c.37.1.8 85594 1wf3A 301 32.81 c.37.1.8,d.52.3.1 114574,114575 2akaB 299 34.20 c.37.1.8 126914 1bifA 469 36.65 c.37.1.7,c.60.1.4 31961,34003 1j8mF 297 36.70 a.24.13.1,c.37.1.10 62742,62743 2p65A 187 38.47 1nlfA 279 38.90 c.37.1.11 85850 1d2nA 272 39.19 c.37.1.20 32428 2dr3A 247 41.13 1u9iA 519 41.31 c.37.1.11,c.37.1.11 119637,119638 2b8wA 328 41.35 2bekA 257 41.98 1tq6A 413 42.55 c.37.1.8 107202 2g6bA 180 42.89 c.37.1.8 134701 1jbkA 195 44.75 c.37.1.20 71631 1yrbA 262 45.25 c.37.1.10 123915 1g3qA 237 45.61 c.37.1.10 60237 1cr1A 296 46.49 c.37.1.11 32286 1qhlA 227 46.70 c.37.1.12 32382 1rj9A 304 46.74 a.24.13.1,c.37.1.10 97553,97554 3bs4A 260 47.18 2ffqA 171 48.21 2rexB 197 48.28 1lv7A 257 50.00 c.37.1.20 78232 1g291 372 50.22 1f2tA 149 51.52 c.37.1.12 32373 1w9iA 770 51.72 1lw7A 365 52.41 c.26.1.3,c.37.1.1 74295,74296 2gdjA 264 52.54 c.37.1.11 135018 2gxaA 274 53.17 3b9pA 297 55.42 2qu8A 228 55.71 1egaA 301 57.04 c.37.1.8,d.52.3.1 32150,38836 1odfA 290 57.68 c.37.1.6 92782 3bosA 242 57.83 1m7bA 184 57.97 c.37.1.8 74572 1w1wA 430 60.11 c.37.1.12 114080 1z2aA 168 61.58 c.37.1.8 124374 1svmA 377 63.41 c.37.1.20 112126 1ko7A 314 63.47 c.98.2.1,c.91.1.2 72797,72798 2gj8A 172 63.65 c.37.1.8 135270 1eg7A 557 65.00 c.37.1.10 32241 1h65A 270 65.89 c.37.1.8 65640 1tueA 212 66.58 c.37.1.20 107323 1w4rA 195 66.80 1g8fA 511 69.16 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2h17A 181 69.60 1mh1 186 69.66 2dykA 161 71.17 1tca 317 72.38 1mvwA 840 73.70 i.15.1.1 79523 2akaA 776 76.87 1xp8A 366 77.00 c.37.1.11,d.48.1.1 115735,115736 1r4aA 165 77.59 c.37.1.8 96986 3bh0A 315 79.17 2v26A 784 79.35 1vcoA 550 79.41 c.23.16.1,c.37.1.10 108508,108509 1d0yA 761 79.42 b.34.3.1,c.37.1.9 24581,32178 2qmoA 220 81.14 1w78A 422 81.46 2f9lA 199 81.50 c.37.1.8 133166 1elkA 157 83.49 a.118.9.2 19217 1byi 224 87.06 1z0jA 170 88.73 c.37.1.8 124319