# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yuwA	554	2.528	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
2dqlA	115	6.736		
2qxlA	658	10.93		
1vpvA	300	11.38	c.119.1.1	113975
1nq7A	244	12.58	a.123.1.1	92047
2bdtA	189	14.84	c.37.1.25	128344
1uptB	60	15.40	a.193.1.1	99768
1hfuA	503	19.27	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
2bkxA	242	20.77		
2crbA	97	20.79	a.7.16.1	130737
1jekB	36	21.35		
1ulo	152	22.84		
2dt8A	280	24.04		
1hpcA	131	26.25	b.84.1.1	28221
1e4mM	501	32.00	c.1.8.4	59226
1chmA	401	32.30	c.55.2.1,d.127.1.1	33545,41142
1kay	381	34.23		
2oq2A	261	38.71		
3proC	166	40.79	d.52.1.1,d.52.1.1	38812,38813
2opeA	128	43.54		
3c6fA	153	44.77		
2dc0A	434	46.51		
2e1nA	138	46.96		
2g7zA	282	47.03		
1a9mA	99	48.65	b.50.1.1	26642
2o8sA	323	54.78		
2grcA	129	54.85		
1s99A	200	54.90	d.58.48.2	112046
1bupA	386	55.21	c.55.1.1,c.55.1.1	33377,33378
1pzxA	289	56.43	c.119.1.1	95484
2p32A	120	56.59		
2hd0A	128	65.66		
2r31A	239	66.76		
2yruA	118	67.04		
1pswA	348	67.64	c.87.1.7	88287
1xo0A	324	67.95	a.60.9.1,d.163.1.1	115674,115675
2r79A	283	71.38		
2bh1X	96	72.15		
1c7qA	445	73.34	c.80.1.2	35307
1b0zA	445	79.17	c.80.1.2	35309
1htp	131	84.37