# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yuwA	554	2.826	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
2dqlA	115	5.971		
1vpvA	300	7.285	c.119.1.1	113975
2qxlA	658	8.566		
1nq7A	244	12.38	a.123.1.1	92047
2bdtA	189	16.56	c.37.1.25	128344
1hfuA	503	18.10	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
2dt8A	280	21.54		
1kay	381	21.89		
2g7zA	282	25.38		
1chmA	401	28.08	c.55.2.1,d.127.1.1	33545,41142
2bkxA	242	29.56		
1e4mM	501	31.45	c.1.8.4	59226
2crbA	97	33.04	a.7.16.1	130737
2p32A	120	33.67		
3c6fA	153	36.12		
1uptB	60	36.81	a.193.1.1	99768
1pzxA	289	36.90	c.119.1.1	95484
1bupA	386	38.98	c.55.1.1,c.55.1.1	33377,33378
1ulo	152	41.20		
2e1nA	138	41.44		
2oq2A	261	43.65		
1a9mA	99	43.76	b.50.1.1	26642
2dc0A	434	43.85		
2bjrA	368	44.77	b.169.1.1,b.169.1.1	128628,128629
1jekB	36	47.64		
2r79A	283	49.52		
1gnxA	479	51.78	c.1.8.4	76241
2opeA	128	55.94		
3proC	166	57.15	d.52.1.1,d.52.1.1	38812,38813
2grcA	129	62.76		
2r31A	239	63.26		
2yruA	118	66.87		
1b0zA	445	72.86	c.80.1.2	35309
1hpcA	131	73.01	b.84.1.1	28221
2dvzA	314	76.70		
1pswA	348	77.21	c.87.1.7	88287
1ug6A	431	80.79	c.1.8.4	88490
2j78A	468	89.03	c.1.8.4	138099
1s99A	200	89.92	d.58.48.2	112046