# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yuwA	554	2.286	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
2dqlA	115	8.319		
1vpvA	300	9.775	c.119.1.1	113975
2qxlA	658	11.14		
1nq7A	244	11.17	a.123.1.1	92047
2crbA	97	16.37	a.7.16.1	130737
1kay	381	17.55		
2bdtA	189	20.25	c.37.1.25	128344
1hfuA	503	20.99	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
1e4mM	501	21.68	c.1.8.4	59226
1jekB	36	25.57		
2dt8A	280	26.43		
1chmA	401	27.26	c.55.2.1,d.127.1.1	33545,41142
2bkxA	242	29.80		
2g7zA	282	33.36		
1bupA	386	34.74	c.55.1.1,c.55.1.1	33377,33378
1uptB	60	37.09	a.193.1.1	99768
2p32A	120	37.48		
3proC	166	39.92	d.52.1.1,d.52.1.1	38812,38813
2dc0A	434	40.31		
1a9mA	99	41.76	b.50.1.1	26642
1ulo	152	42.86		
2oq2A	261	43.90		
1pzxA	289	44.50	c.119.1.1	95484
1gnxA	479	45.29	c.1.8.4	76241
2e1nA	138	48.95		
3c6fA	153	52.35		
1hpcA	131	55.67	b.84.1.1	28221
2opeA	128	55.74		
2r79A	283	57.66		
2j78A	468	62.20	c.1.8.4	138099
2r31A	239	63.91		
2grcA	129	64.25		
2yruA	118	68.10		
2bjrA	368	68.46	b.169.1.1,b.169.1.1	128628,128629
1ug6A	431	71.96	c.1.8.4	88490
1n2zA	245	74.74	c.92.2.2	79865
1pswA	348	75.00	c.87.1.7	88287
1fyeA	229	75.94	c.23.16.4	31477
1b0zA	445	76.39	c.80.1.2	35309
1s99A	200	82.70	d.58.48.2	112046
1ybeA	449	86.04	c.1.17.2,d.41.2.2	116605,116606