# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vpvA	300	10.34	c.119.1.1	113975
1yuwA	554	10.56	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
2dqlA	115	13.81		
2qxlA	658	17.58		
2bdtA	189	17.91	c.37.1.25	128344
1jekB	36	24.46		
2crbA	97	25.21	a.7.16.1	130737
2dt8A	280	25.60		
1chmA	401	25.72	c.55.2.1,d.127.1.1	33545,41142
1nq7A	244	33.54	a.123.1.1	92047
1hfuA	503	33.96	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
1e4mM	501	34.10	c.1.8.4	59226
1uptB	60	40.38	a.193.1.1	99768
2opeA	128	41.93		
2e1nA	138	42.32		
1w9aA	147	54.75	b.45.1.1	114408
1a9mA	99	58.76	b.50.1.1	26642
1ulo	152	62.57		
2o8sA	323	64.04		
2r79A	283	66.12		
2g7zA	282	68.59		
3c6fA	153	70.45		
1hpcA	131	73.59	b.84.1.1	28221
2oq2A	261	73.97		
2grcA	129	78.57		
2iabA	155	84.76		
1pzxA	289	84.86	c.119.1.1	95484
2p32A	120	85.14