# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2azeA 155 2.858 e.63.1.1 127605 3c6fA 153 5.019 1gt7A 274 6.002 c.74.1.1 70398 1k1eA 180 6.161 c.108.1.5 67995 2dqlA 115 6.239 1s99A 200 9.678 d.58.48.2 112046 1vi1A 345 10.36 c.77.1.4 100724 1csh 435 12.09 1iomA 377 12.96 a.103.1.1 83698 2g7zA 282 13.20 2e1nA 138 14.15 1fiqC 763 14.96 d.41.1.1,d.133.1.1 38588,41418 1kblA 873 14.99 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2crbA 97 18.80 a.7.16.1 130737 3bjuA 521 19.29 1fm2B 520 20.48 1rm6A 769 20.79 d.41.1.1,d.133.1.1 111872,111873 1pzxA 289 22.00 c.119.1.1 95484 1jdw 423 22.29 2hd0A 128 22.75 1e9lA 377 22.87 c.1.8.5,d.26.3.1 59395,59396 1jekB 36 25.78 2bdtA 189 25.98 c.37.1.25 128344 1pieA 419 26.18 d.14.1.5,d.58.26.7 94706,94707 1xv5A 401 26.19 2qrvB 230 27.84 2reb 352 28.58 4sbvA 261 29.91 b.121.4.7 23299 1b59A 370 32.57 a.4.5.25,d.127.1.1 16225,41162 2cihA 183 34.36 1b7eA 420 34.68 c.55.3.4 33680 1mrj 247 38.86 2ds3A 761 40.22 1m4mA 140 41.44 g.52.1.1 78605 1l8nA 679 41.55 c.1.8.10,d.92.2.2 84564,84565 2ousA 331 42.66 1ud0A 113 42.78 a.8.4.1 99198 1ojrA 274 43.79 c.74.1.1 93147 1h3gA 601 44.03 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1t9hA 307 44.43 b.40.4.5,c.37.1.8 112358,112359 2bmbA 545 44.89 3c0cA 73 45.96 2qmjA 870 46.38 1yyhA 253 50.76 1jr7A 311 51.58 b.82.2.3 63255 3cbuA 214 52.24 1sczA 233 52.79 c.43.1.1 98802 1peqA 714 53.21 a.98.1.1,c.7.1.2 104131,104132 2b0oE 301 54.27 1hpcA 131 54.29 b.84.1.1 28221 2brxA 244 55.03 c.73.1.3 129028 1v97A 1332 57.33 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1uptB 60 57.37 a.193.1.1 99768 1qs0A 407 58.73 c.36.1.11 31829 1a7aA 432 59.56 c.2.1.4,c.23.12.3 30104,31364 1t82A 155 60.10 d.38.1.5 106639 1mrjA 247 60.77 d.165.1.1 42177 2f8yA 223 61.75 2dt8A 280 63.01 2h1yA 321 65.65 1jilA 420 65.92 c.26.1.1 66745 1yh2A 175 66.16 d.20.1.1 123158 1rypI 222 68.41 d.153.1.4 41877 1qfmA 710 68.48 b.69.7.1,c.69.1.4 27673,34641 1eh8A 207 69.16 a.4.2.1,c.55.7.1 16077,33752 2ae2A 260 69.86 c.2.1.2 29945 1eg5A 384 71.37 c.67.1.3 34429 1gk1B 522 72.54 1x54A 434 72.86 2ccmA 191 74.53 2o8sA 323 74.76 1ecrA 309 76.13 e.2.1.1 42678 1w9aA 147 76.23 b.45.1.1 114408 1iatA 557 77.05 c.80.1.2 62123 1cii 602 77.49 1gnxA 479 79.44 c.1.8.4 76241 1c0aA 585 79.72 b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1bg4A 302 80.45 c.1.8.3 28806 2vl7A 540 80.69 2arzA 247 81.48 b.45.1.1 127225 1o0yA 260 81.69 c.1.10.1 80756 1s9pA 227 81.98 a.123.1.1 105384 1i2mA 216 82.42 c.37.1.8 61568 2opeA 128 84.55 1m6iA 493 84.86 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1u60A 310 85.23 e.3.1.2 107692 2hlkA 255 86.72 1a9mA 99 86.92 b.50.1.1 26642 2bhoA 130 87.75