# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zbpA	273	2.108	e.61.1.1	124861
1x6vA	630	7.842	b.122.1.3,c.26.1.5,c.37.1.4	121755,121756,121757
2rgmA	481	9.585		
1jcfA	344	12.32	c.55.1.1,c.55.1.1	62878,62879
2vbuA	136	12.48		
1sqnA	261	13.38	a.123.1.1	105944
2opeA	128	17.97		
1g60A	260	20.76	c.66.1.11	70151
2f5xA	312	22.11		
1vrvA	101	23.15		
2dt8A	280	25.63		
2r6iA	284	27.37		
1pk1B	89	27.85	a.60.1.2	118712
1k0eA	453	30.08	d.161.1.1	67938
1pzxA	289	30.60	c.119.1.1	95484
1vkrA	125	30.94	c.44.2.1	108689
1v9mA	323	33.23	f.40.1.1	100543
5csmA	256	39.08	a.130.1.2	19494
3ce9A	354	42.61		
1v74B	87	42.87	a.24.20.1	100443
1l5xA	280	43.56	c.106.1.1	77718
2fzfA	175	44.57	a.25.1.1	134437
2i2xA	461	45.19		
1e4mM	501	48.33	c.1.8.4	59226
2r31A	239	55.31		
1bm9A	122	55.63	a.4.5.7	16116
2qxlA	658	66.97		
2bjrA	368	68.52	b.169.1.1,b.169.1.1	128628,128629
1tq4A	413	71.16	c.37.1.8	107201
1gzsB	165	72.14	a.168.1.1	76425
1rlmA	271	72.37	c.108.1.10	111860
2oh3A	167	74.20		
1roaA	122	75.14	d.17.1.2	105024
1hnjA	317	75.64	c.95.1.2,c.95.1.2	35969,35970
2phzA	311	78.13		
2hc0A	99	79.24		
1w66A	232	79.74	d.104.1.3	120652
2fddA	100	82.59		
1o7dA	298	83.22	c.6.2.1	86641
2chuA	296	84.30	c.92.2.4	130485
1r8sA	164	85.38	c.37.1.8	97247
3cm1A	139	85.66		
1hw1A	239	86.05	a.4.5.6,a.78.1.1	16111,18441
2p32A	120	87.17		
1n2zA	245	87.42	c.92.2.2	79865