# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zbpA	273	1.246	e.61.1.1	124861
2rgmA	481	9.039		
1x6vA	630	10.76	b.122.1.3,c.26.1.5,c.37.1.4	121755,121756,121757
1jcfA	344	11.76	c.55.1.1,c.55.1.1	62878,62879
2vbuA	136	12.55		
2r6iA	284	23.20		
2f5xA	312	26.98		
1pk1B	89	28.66	a.60.1.2	118712
1pzxA	289	29.53	c.119.1.1	95484
2dt8A	280	29.67		
1bm9A	122	30.14	a.4.5.7	16116
2bjrA	368	30.93	b.169.1.1,b.169.1.1	128628,128629
2qpxA	376	31.88		
2opeA	128	32.00		
1tq4A	413	32.69	c.37.1.8	107201
1sqnA	261	33.34	a.123.1.1	105944
2i2xA	461	36.68		
1k0eA	453	40.14	d.161.1.1	67938
1l5xA	280	40.93	c.106.1.1	77718
1w66A	232	41.55	d.104.1.3	120652
1e4mM	501	43.54	c.1.8.4	59226
2r31A	239	46.37		
1g60A	260	47.32	c.66.1.11	70151
2fzfA	175	52.04	a.25.1.1	134437
1vrvA	101	52.77		
1gnxA	479	53.36	c.1.8.4	76241
2fddA	100	53.50		
1gzsB	165	54.43	a.168.1.1	76425
2chuA	296	54.92	c.92.2.4	130485
2hc0A	99	55.78		
1hnjA	317	56.06	c.95.1.2,c.95.1.2	35969,35970
1hw1A	239	56.96	a.4.5.6,a.78.1.1	16111,18441
3ce9A	354	57.82		
3b42A	135	60.97		
2qxlA	658	61.68		
2p32A	120	62.08		
3ch0A	272	66.15		
1r8sA	164	67.91	c.37.1.8	97247
1p6oA	161	70.00	c.97.1.2	94185
1xcbA	211	70.01	a.4.5.38,c.2.1.12	109552,109553
5csmA	256	72.11	a.130.1.2	19494
3cm1A	139	73.07		
2phzA	311	75.74		
2fxdA	99	75.76		
1v9mA	323	77.97	f.40.1.1	100543
2g62A	325	81.84	a.268.1.1	134685
1fmbA	104	81.93	b.50.1.1	26777
2r79A	283	82.72		
1n2zA	245	83.06	c.92.2.2	79865
1vkrA	125	85.69	c.44.2.1	108689