# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zbpA	273	1.256	e.61.1.1	124861
2rgmA	481	7.614		
2vbuA	136	14.76		
1x6vA	630	15.90	b.122.1.3,c.26.1.5,c.37.1.4	121755,121756,121757
1jcfA	344	18.23	c.55.1.1,c.55.1.1	62878,62879
2r6iA	284	21.75		
2bjrA	368	28.02	b.169.1.1,b.169.1.1	128628,128629
2i2xA	461	28.70		
2opeA	128	29.23		
1pzxA	289	31.89	c.119.1.1	95484
1sqnA	261	31.99	a.123.1.1	105944
2dt8A	280	32.90		
2f5xA	312	33.49		
1tq4A	413	35.20	c.37.1.8	107201
1e4mM	501	36.04	c.1.8.4	59226
3ce9A	354	36.22		
1l5xA	280	37.42	c.106.1.1	77718
2qpxA	376	38.73		
1bm9A	122	39.61	a.4.5.7	16116
1k0eA	453	40.34	d.161.1.1	67938
1vrvA	101	43.82		
1w66A	232	45.03	d.104.1.3	120652
2chuA	296	45.37	c.92.2.4	130485
1gnxA	479	47.08	c.1.8.4	76241
2r31A	239	48.73		
1g60A	260	50.28	c.66.1.11	70151
1gzsB	165	51.39	a.168.1.1	76425
2fzfA	175	51.43	a.25.1.1	134437
3b42A	135	51.78		
1pk1B	89	51.79	a.60.1.2	118712
1hnjA	317	53.82	c.95.1.2,c.95.1.2	35969,35970
2p32A	120	61.91		
3ch0A	272	63.51		
1hw1A	239	68.32	a.4.5.6,a.78.1.1	16111,18441
1r8sA	164	68.42	c.37.1.8	97247
2r79A	283	68.83		
2phzA	311	71.74		
1vkrA	125	71.94	c.44.2.1	108689
1n2zA	245	75.08	c.92.2.2	79865
3cm1A	139	76.74		
5csmA	256	77.99	a.130.1.2	19494
1p6oA	161	79.04	c.97.1.2	94185
1roaA	122	79.40	d.17.1.2	105024
2g62A	325	80.74	a.268.1.1	134685
2fddA	100	82.24		
1t98A	287	85.51	a.4.5.65,a.47.6.1	119196,119197
2im5A	394	87.43		
1v9mA	323	87.85	f.40.1.1	100543