# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zbpA	273	3.992	e.61.1.1	124861
1x6vA	630	14.32	b.122.1.3,c.26.1.5,c.37.1.4	121755,121756,121757
1jcfA	344	16.29	c.55.1.1,c.55.1.1	62878,62879
1sqnA	261	19.36	a.123.1.1	105944
2rgmA	481	20.84		
2vbuA	136	22.39		
2dt8A	280	25.97		
1vrvA	101	28.30		
2fzfA	175	31.33	a.25.1.1	134437
2opeA	128	32.01		
1pk1B	89	33.11	a.60.1.2	118712
2r6iA	284	34.69		
2bjrA	368	37.06	b.169.1.1,b.169.1.1	128628,128629
1g60A	260	38.71	c.66.1.11	70151
2f5xA	312	41.54		
3ce9A	354	41.95		
1vkrA	125	42.33	c.44.2.1	108689
1v9mA	323	44.42	f.40.1.1	100543
1e4mM	501	44.83	c.1.8.4	59226
1o7dA	298	51.46	c.6.2.1	86641
1pzxA	289	52.08	c.119.1.1	95484
1k0eA	453	52.84	d.161.1.1	67938
2qxlA	658	53.83		
2oh3A	167	60.54		
2r31A	239	66.83		
1hw1A	239	69.24	a.4.5.6,a.78.1.1	16111,18441
1l5xA	280	70.56	c.106.1.1	77718
1r8sA	164	73.65	c.37.1.8	97247
1tr8A	102	77.97		
1bupA	386	78.35	c.55.1.1,c.55.1.1	33377,33378
1bm9A	122	78.70	a.4.5.7	16116
1v74B	87	82.98	a.24.20.1	100443
1rlmA	271	85.53	c.108.1.10	111860
1tq4A	413	86.11	c.37.1.8	107201
1roaA	122	87.60	d.17.1.2	105024
1p6oA	161	87.64	c.97.1.2	94185
5csmA	256	87.73	a.130.1.2	19494
1hnjA	317	88.97	c.95.1.2,c.95.1.2	35969,35970
1gzsB	165	89.54	a.168.1.1	76425
1w66A	232	89.64	d.104.1.3	120652