# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2phzA	311	14.12		
2rgmA	481	17.61		
1i5nA	146	19.47	a.24.10.3	61805
1uptB	60	20.29	a.193.1.1	99768
2opeA	128	23.22		
3cm1A	139	23.82		
2j78A	468	26.32	c.1.8.4	138099
2dt8A	280	27.54		
1eswA	500	32.31	c.1.8.1	59500
1roaA	122	34.19	d.17.1.2	105024
2gpuA	230	34.73	a.123.1.1	135493
1mzgA	146	37.60	d.224.1.1	79696
2qxlA	658	37.85		
2bjrA	368	39.20	b.169.1.1,b.169.1.1	128628,128629
1ud0A	113	42.58	a.8.4.1	99198
1idaA	99	47.44	b.50.1.1	26715
2a6cA	83	49.62	a.35.1.13	126236
1frb	315	53.40		
1qd6C	240	54.21		
1wq3A	322	59.09		
1ug6A	431	59.52	c.1.8.4	88490
1pzxA	289	60.46	c.119.1.1	95484
2qpqA	301	65.45		
1v74B	87	66.27	a.24.20.1	100443
2p32A	120	67.66		
1vrvA	101	72.49		
1zm8A	259	73.75		
1hpcA	131	78.76	b.84.1.1	28221
1htp	131	80.48		
1yuwA	554	81.93	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
3c86A	328	85.47		
1iicA	422	87.84	d.108.1.2,d.108.1.2	62422,62423
1fmbA	104	89.08	b.50.1.1	26777