# List of top-scoring protein chains for T0407.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2anuA 255 1.39e-17 c.6.3.1 127058 2yxoA 267 4.81e-10 1m65A 245 2.41e-09 c.6.3.1 84847 2hpiA 1220 1.09e-05 2hqaA 917 0.1159 2hnhA 910 0.1171 2enxA 310 2.490 1tb3A 352 2.798 c.1.4.1 119205 1wdkC 390 5.053 c.95.1.1,c.95.1.1 109258,109259 1nkvA 256 5.646 c.66.1.21 80577 1skyE 473 6.476 a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 2nzlA 392 8.941 2rduA 387 9.295 2gjlA 328 9.843 2bcgG 453 9.934 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 3cpiG 451 11.33 1w6tA 444 11.81 c.1.11.1,d.54.1.1 120670,120671 2pa1A 87 14.62 2dfaA 250 22.04 c.6.2.5 131469 2ehmA 288 23.50 1qxmA 300 23.65 b.42.2.1,b.42.2.1 96533,96534 1iyxA 432 24.28 c.1.11.1,d.54.1.1 83815,83816 2iuyA 342 24.44 1al8A 359 24.94 c.1.4.1 28608 1gylA 369 25.35 c.1.4.1 28610 1goxA 369 25.43 c.1.4.1 28607 2cdh0 226 25.51 1i74A 309 26.47 c.107.1.1 61867 1vb7A 94 26.52 b.36.1.1 108474 2pcqA 283 27.90 2r8cA 426 28.68 1s6yA 450 28.85 c.2.1.5,d.162.1.2 105314,105315 1np7A 489 29.74 a.99.1.1,c.28.1.1 80677,80678 2qe7D 462 30.42 1okjA 251 30.44 c.55.1.9,c.55.1.9 103998,103999 2abqA 306 31.40 c.72.1.1 126528 1w1hA 151 31.63 b.55.1.1 114076 1ohvA 472 32.60 c.67.1.4 93031 1jvbA 347 33.16 b.35.1.2,c.2.1.1 77181,77182 1nbmD 480 33.30 a.69.1.1,b.49.1.1,c.37.1.11 18290,26455,32335 2jdiD 482 33.54 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1mabB 479 36.54 a.69.1.1,b.49.1.1,c.37.1.11 18312,26477,32357 1w5tA 412 37.46 a.4.5.11,c.37.1.20 114255,114256 1tuoA 464 37.88 1wppA 311 42.91 c.107.1.1 114828 1k20A 310 43.91 c.107.1.1 68027 2oasA 436 45.69 1ntoA 347 45.85 b.35.1.2,c.2.1.1 92137,92138 1im5A 180 46.30 c.33.1.3 66211 2dqwA 294 49.56 1e79D 482 51.54 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 2im5A 394 53.83 1r9jA 673 54.78 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1fx0B 498 55.09 a.69.1.1,b.49.1.1,c.37.1.11 60083,60084,60085 1vr6A 350 56.39 c.1.10.4 120439 1rzmA 338 57.07 c.1.10.4 105137 1r1tA 122 57.89 a.4.5.5 104769 2p53A 382 59.59 2qhsA 237 59.96 1bvnP 496 61.07 b.71.1.1,c.1.8.1 27767,28754 1yrrA 382 62.57 b.92.1.5,c.1.9.10 123935,123936 1pigA 496 63.25 b.71.1.1,c.1.8.1 27764,28751 1eqwA 156 64.02 b.1.8.1 22294 1jfhA 496 66.66 b.71.1.1,c.1.8.1 27762,28749 2d8hA 80 68.88 1r22A 122 69.26 a.4.5.5 104777 2hc9A 491 69.81 2i54A 247 71.06 1ihnA 113 71.99 c.103.1.1 62388 2qhtA 210 72.03 1v7wA 807 72.75 a.102.1.4,b.30.5.3 108411,108412 3b79A 129 73.05 1vahA 496 73.95 b.71.1.1,c.1.8.1 119905,119906 1ppiA 496 74.17 b.71.1.1,c.1.8.1 27763,28750 2hldD 478 75.09 1kxqA 496 75.54 b.71.1.1,c.1.8.1 73163,73164 1hx0A 496 75.66 b.71.1.1,c.1.8.1 61346,61347 2blnA 305 76.16 b.46.1.1,c.65.1.1 128734,128735 1yrwA 302 76.93 b.46.1.1,c.65.1.1 123942,123943 1wgzA 510 79.15 2gx8A 397 79.74 c.135.1.1 135825 1dhkA 496 79.89 b.71.1.1,c.1.8.1 27761,28748 1s8nA 205 79.94 c.23.1.1 105374 2fymA 431 81.62 c.1.11.1,d.54.1.1 134379,134380 1oseA 496 82.63 b.71.1.1,c.1.8.1 27766,28753 2ayiA 408 82.83 e.60.1.1 127554 1wurA 220 85.56 d.96.1.1 121309 2qr6A 393 85.94 2hfxA 260 88.05 1hjqA 332 88.12 c.1.8.3 83491 12asA 330 88.80 d.104.1.1 40783