# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 6.69e-13 c.6.3.1 84847 2anuA 255 8.31e-13 c.6.3.1 127058 2yxoA 267 1.62e-11 2hnhA 910 7.26e-07 2nzlA 392 0.7695 2rduA 387 1.155 2du2A 374 2.351 2pgfA 371 4.681 1ltdA 506 4.958 c.1.4.1,d.120.1.1 28618,41086 1vflA 356 5.009 c.1.9.1 120041 1fkx 349 5.250 1w1iE 357 6.161 c.1.9.1 109051 2amxA 376 7.666 c.1.9.1 127024 1a4mA 349 8.312 c.1.9.1 29014 2nliA 368 10.95 1ojxA 263 13.75 c.1.10.1 93164 1g0cA 364 15.36 c.1.8.3 60165 2eplX 627 16.48 2i5gA 325 23.01 1i60A 278 23.48 c.1.15.4 71118 2qulA 290 24.47 1qwgA 251 24.91 c.1.27.1 96473 2nlyA 245 25.75 c.6.2.7 138364 1yrrA 382 26.45 b.92.1.5,c.1.9.10 123935,123936 3b40A 417 26.96 1acmA 310 27.93 c.78.1.1,c.78.1.1 35180,35181 2tpsA 227 28.34 c.1.3.1 28591 2e7yA 280 28.99 1wbhA 214 31.94 c.1.10.1 120845 1wa3A 205 32.94 c.1.10.1 120802 2qw5A 335 33.96 3cgvA 397 35.41 1erzA 303 35.73 d.160.1.2 59498 3csuA 310 35.75 c.78.1.1,c.78.1.1 35094,35095 1v77A 212 35.88 c.6.3.2 108402 8atcA 310 36.28 c.78.1.1,c.78.1.1 35132,35133 1h5yA 253 37.34 c.1.2.1 65638 2ggtA 164 37.51 c.47.1.10 135156 1xhcA 367 37.61 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1ad4A 266 41.08 c.1.21.1 29670 1ho1A 242 43.94 c.1.24.1 61097 2yw3A 207 44.30 2o55A 258 44.48 1vlwA 217 46.02 c.1.10.1 108868 1ny1A 240 47.39 c.6.2.3 86395 3ciwA 348 47.51 1ekxA 311 48.23 c.78.1.1,c.78.1.1 35088,35089 2dfaA 250 51.85 c.6.2.5 131469 2cc0A 195 52.95 c.6.2.3 130209 1ceoA 343 53.21 c.1.8.3 28808 2ipiA 521 53.94 1vliA 385 54.18 b.85.1.1,c.1.10.6 108830,108831 2e11A 266 54.39 1gkpA 458 56.02 b.92.1.3,c.1.9.6 70231,70232 1m5wA 243 56.61 c.1.24.1 84836 1hw6A 278 56.79 c.1.7.1 61296 1ml4A 308 57.19 c.78.1.1,c.78.1.1 79255,79256 2d13A 227 59.32 c.26.2.1 131121 1ng4A 390 60.81 c.3.1.2,d.16.1.3 85666,85667 2obnA 349 61.68 3grsA 478 62.04 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1tv8A 340 62.57 c.1.28.3 107352 3be7A 408 62.81 1reqA 727 63.03 c.1.19.1,c.23.6.1 29620,31247 1ccwA 137 63.05 c.23.6.1 31238 2a0mA 316 63.50 c.42.1.1 125960 1zgdA 312 65.02 1goxA 369 65.32 c.1.4.1 28607 1rvgA 305 66.97 c.1.10.2 97920 2uxyA 341 68.28 1tb3A 352 70.76 c.1.4.1 119205 1h1nA 305 71.28 c.1.8.3 70855 1x9iA 302 71.72 c.80.1.1 114997 1eceA 358 71.82 c.1.8.3 28813 2ohwA 133 75.04 1vhcA 224 75.47 c.1.10.1 100661 1uf5A 303 76.22 d.160.1.2 107808 1fwrA 213 77.07 c.1.10.1 29164 2rghA 571 77.35 1p4cA 380 77.60 c.1.4.1 94100 1vh7A 265 78.18 c.1.2.1 100646 1e19A 314 78.62 c.73.1.1 34967 1emsA 440 78.77 d.13.1.1,d.160.1.1 37520,42086 2jg1A 330 80.19 2yxbA 161 80.82 1q1rA 431 80.89 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2g0wA 296 81.09 c.1.15.4 134503 2zc8A 369 81.19 1xuuA 349 82.00 b.85.1.1,c.1.10.6 116067,116068 1ionA 243 82.20 c.37.1.10 62633 2j13A 247 83.46 c.6.2.3 137934 1nmoA 247 84.43 c.135.1.1 91980 1zkpA 268 85.21 d.157.1.9 125205 2iw0A 254 85.24 c.6.2.3 137737 1vd6A 224 85.45 c.1.18.3 119991 1xw8A 252 85.57 c.6.2.5 116111 2gagB 405 86.13 1ra0A 430 86.28 b.92.1.2,c.1.9.5 111756,111757 2ragA 417 86.80 1gs5A 258 88.15 c.73.1.2 70395