# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2anuA 255 2.01e-13 c.6.3.1 127058 1m65A 245 2.03e-13 c.6.3.1 84847 2yxoA 267 4.63e-12 2hnhA 910 6.56e-07 2nzlA 392 1.468 2rduA 387 1.514 1vflA 356 2.133 c.1.9.1 120041 2du2A 374 2.681 1fkx 349 3.027 1w1iE 357 3.410 c.1.9.1 109051 1a4mA 349 5.847 c.1.9.1 29014 2pgfA 371 6.681 1ltdA 506 7.592 c.1.4.1,d.120.1.1 28618,41086 2amxA 376 14.43 c.1.9.1 127024 1u1iA 392 14.99 c.2.1.3,d.81.1.3 107582,107583 2nliA 368 16.27 1eceA 358 19.66 c.1.8.3 28813 1ceoA 343 19.74 c.1.8.3 28808 2ggtA 164 24.17 c.47.1.10 135156 2qulA 290 25.79 2e7yA 280 26.32 2eplX 627 26.79 2i5gA 325 28.25 2obnA 349 28.30 2pz0A 252 28.38 1yrrA 382 28.41 b.92.1.5,c.1.9.10 123935,123936 1xhcA 367 29.41 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1qwgA 251 29.57 c.1.27.1 96473 2dfaA 250 32.11 c.6.2.5 131469 1gkpA 458 32.69 b.92.1.3,c.1.9.6 70231,70232 3b40A 417 33.04 1ad4A 266 33.18 c.1.21.1 29670 2nlyA 245 33.28 c.6.2.7 138364 1i60A 278 33.97 c.1.15.4 71118 2qw5A 335 34.91 8atcA 310 36.63 c.78.1.1,c.78.1.1 35132,35133 1m5wA 243 37.65 c.1.24.1 84836 1acmA 310 40.88 c.78.1.1,c.78.1.1 35180,35181 1v77A 212 41.03 c.6.3.2 108402 1ho1A 242 42.04 c.1.24.1 61097 3ciwA 348 42.87 1ojxA 263 45.37 c.1.10.1 93164 1g0cA 364 47.00 c.1.8.3 60165 1ionA 243 52.17 c.37.1.10 62633 2tpsA 227 52.75 c.1.3.1 28591 4ubpC 570 53.74 b.92.1.1,c.1.9.2 28431,29053 1p4cA 380 55.53 c.1.4.1 94100 1v6tA 255 55.73 c.6.2.5 113550 3csuA 310 56.46 c.78.1.1,c.78.1.1 35094,35095 1wbhA 214 57.91 c.1.10.1 120845 1ng4A 390 59.78 c.3.1.2,d.16.1.3 85666,85667 1ccwA 137 62.66 c.23.6.1 31238 1h5vA 304 63.50 c.1.8.3 70898 1ekxA 311 63.79 c.78.1.1,c.78.1.1 35088,35089 1zkpA 268 64.65 d.157.1.9 125205 2o55A 258 64.74 1nmoA 247 66.11 c.135.1.1 91980 1ny1A 240 66.39 c.6.2.3 86395 1wa3A 205 66.85 c.1.10.1 120802 1xw8A 252 67.72 c.6.2.5 116111 1ml4A 308 68.94 c.78.1.1,c.78.1.1 79255,79256 1hw6A 278 69.29 c.1.7.1 61296 1gr0A 367 69.71 c.2.1.3,d.81.1.3 70379,70380 2rghA 571 71.33 1tv8A 340 73.05 c.1.28.3 107352 2ohwA 133 75.13 1h5yA 253 75.69 c.1.2.1 65638 1e19A 314 76.40 c.73.1.1 34967 1gs5A 258 76.44 c.73.1.2 70395 2pyxA 526 77.72 3cgvA 397 79.44 1z85A 234 79.64 2d13A 227 80.17 c.26.2.1 131121 1vhcA 224 81.76 c.1.10.1 100661 1erzA 303 81.77 d.160.1.2 59498 1tz9A 367 82.56 c.1.15.6 107466 2a0mA 316 84.82 c.42.1.1 125960 2rebA 352 86.54 c.37.1.11,d.48.1.1 32282,38767 1reqA 727 86.63 c.1.19.1,c.23.6.1 29620,31247 2g0wA 296 89.13 c.1.15.4 134503 1gox 370 89.69