# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2anuA 255 5.55e-12 c.6.3.1 127058 1m65A 245 8.35e-12 c.6.3.1 84847 2yxoA 267 1.02e-10 2hnhA 910 2.17e-06 2nzlA 392 0.8543 2rduA 387 0.8948 1vflA 356 3.406 c.1.9.1 120041 2du2A 374 3.757 1fkx 349 4.389 1w1iE 357 4.671 c.1.9.1 109051 1ltdA 506 6.334 c.1.4.1,d.120.1.1 28618,41086 2pgfA 371 7.592 1a4mA 349 8.354 c.1.9.1 29014 2amxA 376 14.25 c.1.9.1 127024 2qulA 290 16.61 2nliA 368 16.83 1acmA 310 23.44 c.78.1.1,c.78.1.1 35180,35181 1ad4A 266 25.12 c.1.21.1 29670 1h5yA 253 25.61 c.1.2.1 65638 1xhcA 367 26.70 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 8atcA 310 28.00 c.78.1.1,c.78.1.1 35132,35133 2e7yA 280 30.88 1g0cA 364 31.75 c.1.8.3 60165 1ojxA 263 31.81 c.1.10.1 93164 3b40A 417 31.93 1i60A 278 32.13 c.1.15.4 71118 2ggtA 164 32.31 c.47.1.10 135156 1u1iA 392 32.58 c.2.1.3,d.81.1.3 107582,107583 2eplX 627 33.47 2dfaA 250 34.14 c.6.2.5 131469 1yrrA 382 35.51 b.92.1.5,c.1.9.10 123935,123936 1ceoA 343 37.20 c.1.8.3 28808 1v77A 212 37.23 c.6.3.2 108402 3csuA 310 39.31 c.78.1.1,c.78.1.1 35094,35095 3cgvA 397 41.01 1ekxA 311 41.11 c.78.1.1,c.78.1.1 35088,35089 2qw5A 335 41.89 1gkpA 458 43.20 b.92.1.3,c.1.9.6 70231,70232 1wa3A 205 43.37 c.1.10.1 120802 1m5wA 243 43.59 c.1.24.1 84836 2tpsA 227 44.04 c.1.3.1 28591 1ml4A 308 46.11 c.78.1.1,c.78.1.1 79255,79256 1ny1A 240 46.26 c.6.2.3 86395 1erzA 303 47.81 d.160.1.2 59498 2nlyA 245 47.84 c.6.2.7 138364 1ionA 243 49.09 c.37.1.10 62633 1ng4A 390 52.92 c.3.1.2,d.16.1.3 85666,85667 1eceA 358 53.36 c.1.8.3 28813 2a0mA 316 54.62 c.42.1.1 125960 1vh7A 265 54.76 c.1.2.1 100646 2ipiA 521 54.88 3grsA 478 56.78 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1wbhA 214 57.85 c.1.10.1 120845 1e19A 314 61.33 c.73.1.1 34967 1vlwA 217 61.65 c.1.10.1 108868 2yw3A 207 62.73 3ciwA 348 65.27 2fywA 267 65.71 c.135.1.1 134408 1tb3A 352 65.72 c.1.4.1 119205 1qwgA 251 65.90 c.1.27.1 96473 1nmoA 247 66.14 c.135.1.1 91980 1ccwA 137 67.29 c.23.6.1 31238 1emsA 440 67.88 d.13.1.1,d.160.1.1 37520,42086 2obnA 349 68.41 2i5gA 325 71.08 1thfD 253 71.89 c.1.2.1 28535 2o55A 258 73.95 1goxA 369 74.75 c.1.4.1 28607 1ho1A 242 75.18 c.1.24.1 61097 1hw6A 278 75.56 c.1.7.1 61296 3b9oA 440 76.15 1uf5A 303 77.28 d.160.1.2 107808 1gs5A 258 77.88 c.73.1.2 70395 1rvgA 305 79.40 c.1.10.2 97920 1fl2A 310 81.60 c.3.1.5,c.3.1.5 59869,59870 2gagB 405 81.60 1vliA 385 82.10 b.85.1.1,c.1.10.6 108830,108831 1yw1A 442 82.93 c.1.16.4 124130 1zkpA 268 83.06 d.157.1.9 125205 1xw8A 252 83.87 c.6.2.5 116111 2p10A 286 85.07 1vl2A 421 86.10 c.26.2.1,d.210.1.1 108708,108709 1vd6A 224 86.92 c.1.18.3 119991 2yv1A 294 88.19 2e11A 266 88.40 1p4cA 380 89.02 c.1.4.1 94100 2b7kA 200 89.30 c.47.1.10 128042