# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2anuA 255 5.80e-12 c.6.3.1 127058 1m65A 245 8.07e-12 c.6.3.1 84847 2yxoA 267 9.67e-11 2hnhA 910 2.19e-06 2rduA 387 0.9029 2nzlA 392 0.9824 1vflA 356 3.923 c.1.9.1 120041 2du2A 374 4.226 1w1iE 357 5.128 c.1.9.1 109051 1fkx 349 5.149 1ltdA 506 6.405 c.1.4.1,d.120.1.1 28618,41086 1a4mA 349 10.04 c.1.9.1 29014 2pgfA 371 11.58 2qulA 290 15.24 2nliA 368 15.71 2amxA 376 18.53 c.1.9.1 127024 1h5yA 253 20.52 c.1.2.1 65638 1ad4A 266 22.97 c.1.21.1 29670 3b40A 417 25.15 1acmA 310 26.85 c.78.1.1,c.78.1.1 35180,35181 2eplX 627 27.54 1xhcA 367 29.35 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2e7yA 280 31.31 1ceoA 343 32.58 c.1.8.3 28808 1m5wA 243 32.93 c.1.24.1 84836 2ggtA 164 33.34 c.47.1.10 135156 1yrrA 382 33.69 b.92.1.5,c.1.9.10 123935,123936 8atcA 310 33.99 c.78.1.1,c.78.1.1 35132,35133 2dfaA 250 34.08 c.6.2.5 131469 1g0cA 364 35.85 c.1.8.3 60165 1v77A 212 38.77 c.6.3.2 108402 1wa3A 205 39.52 c.1.10.1 120802 1ojxA 263 39.77 c.1.10.1 93164 1gkpA 458 41.12 b.92.1.3,c.1.9.6 70231,70232 1ng4A 390 41.95 c.3.1.2,d.16.1.3 85666,85667 1u1iA 392 43.36 c.2.1.3,d.81.1.3 107582,107583 3cgvA 397 43.74 1eceA 358 44.16 c.1.8.3 28813 1ionA 243 46.93 c.37.1.10 62633 1i60A 278 47.06 c.1.15.4 71118 1erzA 303 47.18 d.160.1.2 59498 2obnA 349 47.55 3csuA 310 50.42 c.78.1.1,c.78.1.1 35094,35095 2nlyA 245 50.48 c.6.2.7 138364 2ipiA 521 50.57 2qw5A 335 50.94 1ekxA 311 56.41 c.78.1.1,c.78.1.1 35088,35089 2tpsA 227 57.63 c.1.3.1 28591 1vh7A 265 57.65 c.1.2.1 100646 1thfD 253 60.13 c.1.2.1 28535 1ny1A 240 60.37 c.6.2.3 86395 1ho1A 242 63.79 c.1.24.1 61097 3ciwA 348 64.13 1ml4A 308 64.15 c.78.1.1,c.78.1.1 79255,79256 1fl2A 310 64.69 c.3.1.5,c.3.1.5 59869,59870 1e19A 314 65.28 c.73.1.1 34967 2i5gA 325 65.41 1qwgA 251 66.90 c.1.27.1 96473 3grsA 478 68.20 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2yw3A 207 69.91 1uf5A 303 70.46 d.160.1.2 107808 1wbhA 214 71.81 c.1.10.1 120845 1emsA 440 71.86 d.13.1.1,d.160.1.1 37520,42086 2a0mA 316 73.07 c.42.1.1 125960 1vlwA 217 73.14 c.1.10.1 108868 1ccwA 137 74.09 c.23.6.1 31238 2yv1A 294 74.86 2o55A 258 75.05 1yw1A 442 75.51 c.1.16.4 124130 1tb3A 352 77.80 c.1.4.1 119205 1nmoA 247 77.86 c.135.1.1 91980 3b9oA 440 79.54 1rvgA 305 80.34 c.1.10.2 97920 1tv8A 340 81.35 c.1.28.3 107352 1gs5A 258 81.80 c.73.1.2 70395 2fywA 267 82.34 c.135.1.1 134408 2gagB 405 82.43 2rghA 571 84.21 1hw6A 278 84.58 c.1.7.1 61296 1gv4A 528 85.35 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1v6tA 255 85.52 c.6.2.5 113550 2e5vA 472 86.52 2p10A 286 86.53 1goxA 369 89.10 c.1.4.1 28607