# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2anuA 255 1.43e-12 c.6.3.1 127058 1m65A 245 1.03e-11 c.6.3.1 84847 2yxoA 267 3.39e-10 2hnhA 910 2.68e-06 2nzlA 392 2.047 2rduA 387 2.889 1fkx 349 5.742 1ltdA 506 5.821 c.1.4.1,d.120.1.1 28618,41086 1w1iE 357 11.20 c.1.9.1 109051 2du2A 374 11.65 1a4mA 349 15.23 c.1.9.1 29014 1v77A 212 15.46 c.6.3.2 108402 2pgfA 371 17.77 1qwgA 251 18.45 c.1.27.1 96473 1wa3A 205 19.89 c.1.10.1 120802 3be7A 408 20.16 1vflA 356 24.62 c.1.9.1 120041 2amxA 376 24.71 c.1.9.1 127024 1vlwA 217 25.80 c.1.10.1 108868 1wbhA 214 25.83 c.1.10.1 120845 1ny1A 240 26.30 c.6.2.3 86395 1knwA 425 27.79 b.49.2.3,c.1.6.1 90969,90970 1fwrA 213 28.76 c.1.10.1 29164 2nlyA 245 30.76 c.6.2.7 138364 1erzA 303 31.59 d.160.1.2 59498 1hyuA 521 33.05 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1ojxA 263 34.22 c.1.10.1 93164 4ubpC 570 36.87 b.92.1.1,c.1.9.2 28431,29053 1vk4A 298 37.80 c.72.1.1 100850 1mxsA 225 38.69 c.1.10.1 91494 2ggtA 164 39.15 c.47.1.10 135156 2p3eA 420 40.65 2jg1A 330 41.22 1gkpA 458 41.48 b.92.1.3,c.1.9.6 70231,70232 1vliA 385 42.25 b.85.1.1,c.1.10.6 108830,108831 2yw3A 207 42.98 1acmA 310 44.78 c.78.1.1,c.78.1.1 35180,35181 1ho1A 242 45.94 c.1.24.1 61097 1vhcA 224 47.96 c.1.10.1 100661 1m5wA 243 49.21 c.1.24.1 84836 2o14A 375 51.50 1ccwA 137 51.90 c.23.6.1 31238 1emsA 440 52.47 d.13.1.1,d.160.1.1 37520,42086 3csuA 310 52.74 c.78.1.1,c.78.1.1 35094,35095 2tpsA 227 52.91 c.1.3.1 28591 1xuuA 349 53.39 b.85.1.1,c.1.10.6 116067,116068 1xfkA 336 54.45 c.42.1.1 115264 2nliA 368 54.66 8atcA 310 55.63 c.78.1.1,c.78.1.1 35132,35133 2fywA 267 56.39 c.135.1.1 134408 1tyyA 339 56.69 c.72.1.1 112850 2e7yA 280 57.32 1fl2A 310 57.46 c.3.1.5,c.3.1.5 59869,59870 2i5gA 325 58.02 2vhhA 405 58.24 1qcwA 410 59.13 c.1.4.1 28622 1geqA 248 64.91 c.1.2.4 28589 2rbkA 261 64.99 1ng4A 390 65.18 c.3.1.2,d.16.1.3 85666,85667 1i60A 278 67.03 c.1.15.4 71118 1y56B 382 68.30 2iw0A 254 68.46 c.6.2.3 137737 2bleA 367 68.95 1xw8A 252 69.85 c.6.2.5 116111 1m6iA 493 69.93 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1ml4A 308 71.12 c.78.1.1,c.78.1.1 79255,79256 3cnyA 301 71.22 1xhcA 367 71.50 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2pljA 419 74.34 2qulA 290 76.61 1p4cA 380 77.37 c.1.4.1 94100 3b40A 417 79.06 2bdqA 224 82.04 1vd6A 224 82.32 c.1.18.3 119991 1ymqA 261 82.97 c.108.1.10 123707 1nmoA 247 83.39 c.135.1.1 91980 1goxA 369 84.16 c.1.4.1 28607 1zgdA 312 85.12 3cgvA 397 85.32 1yrrA 382 86.92 b.92.1.5,c.1.9.10 123935,123936 2nvaA 372 87.78 2j66A 428 88.01 2j13A 247 88.25 c.6.2.3 137934 1gv4A 528 89.08 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1ad4A 266 89.83 c.1.21.1 29670