# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 4.01e-12 c.6.3.1 84847 2anuA 255 6.46e-12 c.6.3.1 127058 2yxoA 267 9.59e-11 2hnhA 910 1.10e-06 2nzlA 392 1.218 2rduA 387 1.451 1vflA 356 3.263 c.1.9.1 120041 1ltdA 506 3.553 c.1.4.1,d.120.1.1 28618,41086 2du2A 374 5.140 1fkx 349 6.523 1w1iE 357 6.835 c.1.9.1 109051 2pgfA 371 7.013 1a4mA 349 9.945 c.1.9.1 29014 2eplX 627 9.98 2amxA 376 15.44 c.1.9.1 127024 1acmA 310 16.70 c.78.1.1,c.78.1.1 35180,35181 2i5gA 325 17.24 1qwgA 251 20.72 c.1.27.1 96473 2nliA 368 20.87 8atcA 310 21.90 c.78.1.1,c.78.1.1 35132,35133 3csuA 310 28.12 c.78.1.1,c.78.1.1 35094,35095 2ggtA 164 29.09 c.47.1.10 135156 1ad4A 266 29.24 c.1.21.1 29670 1ekxA 311 30.39 c.78.1.1,c.78.1.1 35088,35089 3grsA 478 30.48 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1g0cA 364 30.51 c.1.8.3 60165 1yrrA 382 30.58 b.92.1.5,c.1.9.10 123935,123936 1ng4A 390 31.15 c.3.1.2,d.16.1.3 85666,85667 3cgvA 397 31.53 2rghA 571 31.72 1i60A 278 32.63 c.1.15.4 71118 2e7yA 280 33.79 1v77A 212 34.61 c.6.3.2 108402 1ojxA 263 35.04 c.1.10.1 93164 1u1iA 392 35.85 c.2.1.3,d.81.1.3 107582,107583 3b79A 129 37.98 3b40A 417 38.78 1nmoA 247 38.87 c.135.1.1 91980 2tpsA 227 38.97 c.1.3.1 28591 2qulA 290 40.12 1ml4A 308 42.56 c.78.1.1,c.78.1.1 79255,79256 1h5vA 304 43.31 c.1.8.3 70898 1wa3A 205 43.93 c.1.10.1 120802 1goxA 369 44.99 c.1.4.1 28607 1m5wA 243 45.76 c.1.24.1 84836 1wbhA 214 46.37 c.1.10.1 120845 1ho1A 242 46.65 c.1.24.1 61097 1gkpA 458 46.88 b.92.1.3,c.1.9.6 70231,70232 1vlwA 217 49.13 c.1.10.1 108868 1y56B 382 49.44 1gs5A 258 49.49 c.73.1.2 70395 2bleA 367 51.49 1ccwA 137 52.39 c.23.6.1 31238 2yw3A 207 52.40 1nhsA 447 52.68 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ny1A 240 54.30 c.6.2.3 86395 2yxbA 161 55.12 2e5vA 472 55.44 1ceoA 343 58.51 c.1.8.3 28808 2ipiA 521 58.80 1k6wA 426 59.24 b.92.1.2,c.1.9.5 68236,68237 2nlyA 245 60.83 c.6.2.7 138364 1xw8A 252 61.09 c.6.2.5 116111 1zgdA 312 61.75 2dfaA 250 61.96 c.6.2.5 131469 2b7kA 200 62.43 c.47.1.10 128042 3ciwA 348 63.10 1hw6A 278 63.25 c.1.7.1 61296 1nf3C 128 65.80 b.36.1.1 85596 1xhcA 367 66.86 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3cnyA 301 67.81 1erzA 303 69.12 d.160.1.2 59498 1zkpA 268 69.43 d.157.1.9 125205 2gagB 405 70.41 1h5yA 253 72.82 c.1.2.1 65638 1qauA 112 73.96 b.36.1.1 24779 1eceA 358 74.79 c.1.8.3 28813 2g0wA 296 75.03 c.1.15.4 134503 1zk7A 467 76.00 1vr4A 103 77.30 d.230.5.1 120432 2p10A 286 77.53 2qw5A 335 77.84 1reqA 727 78.72 c.1.19.1,c.23.6.1 29620,31247 1g9oA 91 79.88 b.36.1.1 60400 1tv8A 340 79.90 c.1.28.3 107352 3b9oA 440 80.15 2a0mA 316 83.06 c.42.1.1 125960 2qcuA 501 83.20 2ohwA 133 83.32 1yw1A 442 83.68 c.1.16.4 124130 1pdr 99 84.42 1x9iA 302 85.84 c.80.1.1 114997 1p4cA 380 89.15 c.1.4.1 94100 1vhcA 224 89.88 c.1.10.1 100661