# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 1.26e-14 c.6.3.1 84847 2anuA 255 1.54e-14 c.6.3.1 127058 2yxoA 267 4.12e-13 2hnhA 910 2.10e-06 2nzlA 392 0.2296 1vflA 356 1.280 c.1.9.1 120041 2yw2A 424 1.476 2pgfA 371 2.009 1u1iA 392 3.808 c.2.1.3,d.81.1.3 107582,107583 1w1iE 357 3.811 c.1.9.1 109051 2du2A 374 4.014 2rduA 387 4.134 1i60A 278 4.249 c.1.15.4 71118 1r0mA 375 4.874 c.1.11.2,d.54.1.1 104747,104748 1uteA 313 5.765 d.159.1.1 42078 1nhp 447 7.254 1xhcA 367 7.727 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1fkx 349 9.764 2qmjA 870 9.883 1qwgA 251 10.28 c.1.27.1 96473 1fwrA 213 10.50 c.1.10.1 29164 1ho1A 242 11.82 c.1.24.1 61097 1e6pA 499 11.92 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 2i5gA 325 12.35 1a4mA 349 13.08 c.1.9.1 29014 2podA 410 13.24 1vl2A 421 13.39 c.26.2.1,d.210.1.1 108708,108709 1w2wB 191 13.63 2ffcA 353 14.97 c.1.2.3 133378 2oogA 287 17.11 1goiA 499 17.12 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2rebA 352 17.29 c.37.1.11,d.48.1.1 32282,38767 3ladA 476 17.30 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2z00A 426 17.48 1goxA 369 17.49 c.1.4.1 28607 2j13A 247 17.77 c.6.2.3 137934 1nhsA 447 17.94 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 3pga1 337 20.30 2zc8A 369 21.03 2pyxA 526 21.04 2fjbA 643 21.46 1wkyA 464 22.44 b.18.1.31,c.1.8.3 120992,120993 2amxA 376 23.09 c.1.9.1 127024 1gkrA 458 23.35 b.92.1.3,c.1.9.6 70251,70252 2c0hA 353 23.80 c.1.8.3 129594 1ex1A 605 24.17 c.1.8.7,c.23.11.1 29013,31347 1qo8A 566 24.85 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2bryA 497 26.02 1ejxC 567 27.44 b.92.1.1,c.1.9.2 83184,83185 1ny1A 240 27.86 c.6.2.3 86395 3ch0A 272 28.75 1o0yA 260 29.95 c.1.10.1 80756 1m5wA 243 31.36 c.1.24.1 84836 1c7sA 858 31.59 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2d2jA 329 31.93 c.1.9.3 131175 1o12A 376 33.59 b.92.1.5,c.1.9.10 80758,80759 1ojxA 263 34.27 c.1.10.1 93164 2dxnA 274 34.93 2tpsA 227 35.53 c.1.3.1 28591 1ceoA 343 37.11 c.1.8.3 28808 3be7A 408 37.71 1tb3A 352 37.93 c.1.4.1 119205 1b85A 351 38.49 a.93.1.1 18581 2qulA 290 38.96 2ac7A 235 39.41 c.56.2.1 126543 1a87 321 40.02 1ad4A 266 46.55 c.1.21.1 29670 1gw9A 388 46.65 c.1.15.3 70658 1mxsA 225 47.23 c.1.10.1 91494 1xovA 326 47.78 b.34.11.4,c.56.5.6 122206,122207 2b34A 199 48.11 1f07A 321 48.15 c.1.16.3 59560 2p3eA 420 49.16 1gr0A 367 51.21 c.2.1.3,d.81.1.3 70379,70380 1g0cA 364 51.88 c.1.8.3 60165 1tv8A 340 54.22 c.1.28.3 107352 1erzA 303 54.30 d.160.1.2 59498 2uxyA 341 55.18 1kcxA 518 55.28 b.92.1.3,c.1.9.6 90953,90954 1uf5A 303 55.89 d.160.1.2 107808 1zzmA 259 56.39 c.1.9.12 125911 1el3A 316 57.97 c.1.7.1 28672 1v77A 212 59.70 c.6.3.2 108402 2p10A 286 60.07 1c0aA 585 60.71 b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 2d1zA 436 60.77 3csuA 310 61.11 c.78.1.1,c.78.1.1 35094,35095 1jnrA 643 61.25 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1sjdA 368 61.71 c.1.11.2,d.54.1.1 105632,105633 1bqg 451 62.22 2jhfA 374 62.44 b.35.1.2,c.2.1.1 138314,138315 1tf5A 844 63.29 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1p4cA 380 64.19 c.1.4.1 94100 2e7yA 280 64.38 1h5yA 253 64.54 c.1.2.1 65638 1ub3A 220 65.07 c.1.10.1 88395 2i6uA 307 65.17 1y9aA 360 65.49 2as0A 396 66.01 b.122.1.9,c.66.1.51 127227,127228 1ng4A 390 66.23 c.3.1.2,d.16.1.3 85666,85667 2depA 356 66.91 2ggtA 164 67.14 c.47.1.10 135156 1k77A 260 67.15 c.1.15.5 72096 2bdqA 224 67.26 1nbaA 264 68.00 c.33.1.3 31753 2b7kA 200 68.68 c.47.1.10 128042 2hs3A 603 68.76 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1sy3A 184 69.36 b.60.1.1 106110 2a1hA 365 70.02 e.17.1.1 125997 3b9oA 440 70.47 1rvgA 305 70.58 c.1.10.2 97920 1gox 370 71.66 2nydA 370 72.14 2qe8A 343 72.20 1wbhA 214 72.21 c.1.10.1 120845 2odtX 328 72.96 1gpeA 587 73.23 c.3.1.2,d.16.1.1 30387,37951 1e0tA 470 73.27 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1vj0A 380 73.72 b.35.1.2,c.2.1.1 100786,100787 2v1xA 591 73.73 1ccwA 137 73.87 c.23.6.1 31238 2bleA 367 74.00 3coxA 507 74.58 c.3.1.2,d.16.1.1 30332,37863 1vjtA 483 74.63 c.2.1.5,d.162.1.2 100833,100834 1q74A 303 75.31 c.134.1.1 96019 2qgmA 445 75.88 1o5zA 442 78.09 c.59.1.2,c.72.2.2 92530,92531 1qapA 296 78.10 c.1.17.1,d.41.2.1 29559,38595 2yxbA 161 78.27 1yaaA 412 78.55 c.67.1.1 34280 1wa3A 205 78.87 c.1.10.1 120802 1knwA 425 79.49 b.49.2.3,c.1.6.1 90969,90970 2icsA 379 79.71 b.92.1.8,c.1.9.14 137241,137242 1z45A 699 80.03 b.30.5.4,c.2.1.2 124427,124428 2obnA 349 80.36 1e1dA 553 80.96 e.26.1.1 43363 1qwkA 317 81.41 c.1.7.1 96482 2iyeA 263 83.67 1oi7A 288 85.25 c.2.1.8,c.23.4.1 87049,87050 1o7jA 327 85.97 c.88.1.1 81140 1ceo 343 86.24 1h5vA 304 86.95 c.1.8.3 70898 1ypfA 336 87.43 1nhpA 447 87.66 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1p0fA 373 88.42 b.35.1.2,c.2.1.1 87642,87643 1vd6A 224 88.60 c.1.18.3 119991 2rdxA 379 89.46 2aaaA 484 89.46 b.71.1.1,c.1.8.1 27777,28764 3ciwA 348 89.52