# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 6.18e-13 c.6.3.1 84847 2anuA 255 1.69e-12 c.6.3.1 127058 2yxoA 267 1.91e-11 2hnhA 910 6.34e-07 2nzlA 392 1.039 2rduA 387 1.246 1ltdA 506 2.638 c.1.4.1,d.120.1.1 28618,41086 1vflA 356 3.086 c.1.9.1 120041 2du2A 374 3.851 1fkx 349 6.221 1w1iE 357 7.163 c.1.9.1 109051 2pgfA 371 8.859 1a4mA 349 9.191 c.1.9.1 29014 2eplX 627 11.93 2nliA 368 12.70 2i5gA 325 15.53 2amxA 376 16.60 c.1.9.1 127024 1acmA 310 17.89 c.78.1.1,c.78.1.1 35180,35181 1qwgA 251 20.70 c.1.27.1 96473 8atcA 310 23.18 c.78.1.1,c.78.1.1 35132,35133 2ggtA 164 30.15 c.47.1.10 135156 1ng4A 390 30.50 c.3.1.2,d.16.1.3 85666,85667 3b40A 417 30.52 1yrrA 382 31.21 b.92.1.5,c.1.9.10 123935,123936 1i60A 278 31.99 c.1.15.4 71118 2rghA 571 32.97 1ekxA 311 33.46 c.78.1.1,c.78.1.1 35088,35089 3csuA 310 34.01 c.78.1.1,c.78.1.1 35094,35095 1goxA 369 34.13 c.1.4.1 28607 2e7yA 280 35.33 1v77A 212 36.16 c.6.3.2 108402 1ad4A 266 38.07 c.1.21.1 29670 1g0cA 364 39.98 c.1.8.3 60165 1ojxA 263 40.22 c.1.10.1 93164 1ny1A 240 40.70 c.6.2.3 86395 1wbhA 214 41.68 c.1.10.1 120845 2dfaA 250 42.82 c.6.2.5 131469 1wa3A 205 43.11 c.1.10.1 120802 2bleA 367 44.45 2tpsA 227 44.54 c.1.3.1 28591 1m5wA 243 44.69 c.1.24.1 84836 1ho1A 242 44.93 c.1.24.1 61097 1nmoA 247 45.65 c.135.1.1 91980 3cgvA 397 46.43 1gs5A 258 47.43 c.73.1.2 70395 3grsA 478 47.52 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2nlyA 245 47.75 c.6.2.7 138364 1gkpA 458 49.58 b.92.1.3,c.1.9.6 70231,70232 1ml4A 308 50.21 c.78.1.1,c.78.1.1 79255,79256 2obnA 349 51.36 2qulA 290 52.02 1xw8A 252 53.18 c.6.2.5 116111 1h5yA 253 54.29 c.1.2.1 65638 2e5vA 472 55.40 1h5vA 304 55.55 c.1.8.3 70898 1ccwA 137 56.09 c.23.6.1 31238 1u1iA 392 59.01 c.2.1.3,d.81.1.3 107582,107583 1vlwA 217 59.55 c.1.10.1 108868 1k6wA 426 60.06 b.92.1.2,c.1.9.5 68236,68237 1eceA 358 60.15 c.1.8.3 28813 2yw3A 207 60.57 1ceoA 343 62.55 c.1.8.3 28808 1yw1A 442 65.82 c.1.16.4 124130 3b79A 129 65.90 2yxbA 161 66.13 1ionA 243 67.39 c.37.1.10 62633 1y56B 382 69.24 1qauA 112 70.71 b.36.1.1 24779 2p10A 286 70.82 1hw6A 278 71.01 c.1.7.1 61296 2cc0A 195 71.88 c.6.2.3 130209 1x9iA 302 72.41 c.80.1.1 114997 1erzA 303 72.86 d.160.1.2 59498 2b7kA 200 73.13 c.47.1.10 128042 2ipiA 521 73.46 1zgdA 312 75.09 1reqA 727 76.48 c.1.19.1,c.23.6.1 29620,31247 3cnyA 301 76.81 1zkpA 268 77.58 d.157.1.9 125205 1p4cA 380 77.60 c.1.4.1 94100 1z85A 234 78.77 2g0wA 296 78.85 c.1.15.4 134503 3ciwA 348 80.19 2gagB 405 80.19 1nf3C 128 81.13 b.36.1.1 85596 2zc8A 369 82.03 1xhcA 367 82.99 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2ragA 417 84.58 1g9oA 91 84.59 b.36.1.1 60400 1vimA 200 85.81 c.80.1.3 100758 1tv8A 340 85.91 c.1.28.3 107352 1pdr 99 87.11 1fl2A 310 87.88 c.3.1.5,c.3.1.5 59869,59870 1vr4A 103 87.92 d.230.5.1 120432 2iyeA 263 88.05