# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 9.98e-16 c.6.3.1 84847 2anuA 255 1.25e-15 c.6.3.1 127058 2yxoA 267 9.25e-14 2hnhA 910 4.81e-08 2nzlA 392 0.8917 1w1iE 357 1.436 c.1.9.1 109051 2rduA 387 1.441 1vflA 356 2.556 c.1.9.1 120041 1fkx 349 2.688 2du2A 374 3.357 1a4mA 349 4.113 c.1.9.1 29014 2pgfA 371 5.293 1ltdA 506 13.64 c.1.4.1,d.120.1.1 28618,41086 2nliA 368 14.66 2ggtA 164 15.32 c.47.1.10 135156 2amxA 376 16.16 c.1.9.1 127024 1ceoA 343 22.11 c.1.8.3 28808 2pz0A 252 22.11 1u1iA 392 22.41 c.2.1.3,d.81.1.3 107582,107583 1eceA 358 24.78 c.1.8.3 28813 1ionA 243 28.73 c.37.1.10 62633 1m5wA 243 30.74 c.1.24.1 84836 3b40A 417 32.16 2eplX 627 35.48 1xhcA 367 36.89 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2obnA 349 37.99 1ad4A 266 38.85 c.1.21.1 29670 1gkpA 458 39.39 b.92.1.3,c.1.9.6 70231,70232 1yrrA 382 41.23 b.92.1.5,c.1.9.10 123935,123936 2dfaA 250 42.46 c.6.2.5 131469 2b7kA 200 42.82 c.47.1.10 128042 8atcA 310 48.00 c.78.1.1,c.78.1.1 35132,35133 1ny1A 240 48.70 c.6.2.3 86395 1ho1A 242 49.04 c.1.24.1 61097 2rghA 571 49.98 2d13A 227 52.21 c.26.2.1 131121 1acmA 310 52.35 c.78.1.1,c.78.1.1 35180,35181 1qwgA 251 53.40 c.1.27.1 96473 1v77A 212 53.61 c.6.3.2 108402 2qulA 290 54.65 3ciwA 348 54.66 2e7yA 280 54.84 1gv4A 528 54.90 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1ng4A 390 55.27 c.3.1.2,d.16.1.3 85666,85667 1gr0A 367 56.84 c.2.1.3,d.81.1.3 70379,70380 2o55A 258 57.21 1vd6A 224 61.45 c.1.18.3 119991 2nlyA 245 62.86 c.6.2.7 138364 1e19A 314 64.11 c.73.1.1 34967 2e11A 266 65.81 1nmoA 247 65.98 c.135.1.1 91980 1ojxA 263 67.38 c.1.10.1 93164 1i60A 278 67.95 c.1.15.4 71118 2i5gA 325 68.14 1erzA 303 68.64 d.160.1.2 59498 2jilA 97 68.69 2e5vA 472 69.21 2g0wA 296 70.52 c.1.15.4 134503 1bh6A 274 70.90 c.41.1.1 32487 1qauA 112 71.35 b.36.1.1 24779 2qw5A 335 73.40 1g3qA 237 74.94 c.37.1.10 60237 1wbhA 214 75.07 c.1.10.1 120845 1reqA 727 77.12 c.1.19.1,c.23.6.1 29620,31247 1nf3C 128 78.59 b.36.1.1 85596 2gagB 405 79.16 2p3eA 420 79.17 2d1zA 436 80.01 1xw8A 252 80.80 c.6.2.5 116111 1wruA 379 81.45 1x9iA 302 81.57 c.80.1.1 114997 1v6tA 255 81.90 c.6.2.5 113550 1vhcA 224 83.50 c.1.10.1 100661 3b79A 129 86.39 1fl2A 310 86.51 c.3.1.5,c.3.1.5 59869,59870 1q74A 303 88.31 c.134.1.1 96019 2j13A 247 88.44 c.6.2.3 137934 1z85A 234 88.55 2cc0A 195 88.61 c.6.2.3 130209 4ubpC 570 89.03 b.92.1.1,c.1.9.2 28431,29053 1pdr 99 89.22