# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 5.82e-14 c.6.3.1 84847 2anuA 255 1.08e-13 c.6.3.1 127058 2yxoA 267 4.87e-12 2hnhA 910 1.53e-07 2nzlA 392 1.695 2rduA 387 2.089 1w1iE 357 2.305 c.1.9.1 109051 1vflA 356 3.746 c.1.9.1 120041 1fkx 349 3.779 2du2A 374 6.348 1a4mA 349 6.693 c.1.9.1 29014 2pgfA 371 8.798 1acmA 310 15.16 c.78.1.1,c.78.1.1 35180,35181 1ltdA 506 15.42 c.1.4.1,d.120.1.1 28618,41086 2ggtA 164 15.76 c.47.1.10 135156 8atcA 310 18.81 c.78.1.1,c.78.1.1 35132,35133 2amxA 376 19.92 c.1.9.1 127024 1qwgA 251 20.32 c.1.27.1 96473 3csuA 310 22.74 c.78.1.1,c.78.1.1 35094,35095 1u1iA 392 23.45 c.2.1.3,d.81.1.3 107582,107583 1ekxA 311 23.91 c.78.1.1,c.78.1.1 35088,35089 2nliA 368 26.86 1m5wA 243 27.21 c.1.24.1 84836 2rghA 571 27.62 2eplX 627 29.82 1ho1A 242 31.28 c.1.24.1 61097 3ciwA 348 31.43 3b79A 129 32.02 1ml4A 308 34.13 c.78.1.1,c.78.1.1 79255,79256 2obnA 349 34.20 2e7yA 280 34.31 2dfaA 250 34.71 c.6.2.5 131469 1ng4A 390 35.21 c.3.1.2,d.16.1.3 85666,85667 1ad4A 266 35.38 c.1.21.1 29670 1wa3A 205 36.34 c.1.10.1 120802 3cgvA 397 41.10 1xhcA 367 41.46 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2nlyA 245 41.64 c.6.2.7 138364 1nf3C 128 42.08 b.36.1.1 85596 1ceoA 343 42.69 c.1.8.3 28808 1e19A 314 45.21 c.73.1.1 34967 2i5gA 325 46.39 1ny1A 240 47.46 c.6.2.3 86395 2qulA 290 50.24 2gagB 405 51.44 1erzA 303 53.34 d.160.1.2 59498 3grsA 478 53.67 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1g0cA 364 54.00 c.1.8.3 60165 1wbhA 214 54.51 c.1.10.1 120845 2pz0A 252 54.51 1vlwA 217 56.73 c.1.10.1 108868 1eceA 358 56.96 c.1.8.3 28813 1yrrA 382 57.98 b.92.1.5,c.1.9.10 123935,123936 2ipiA 521 58.31 1gkpA 458 59.16 b.92.1.3,c.1.9.6 70231,70232 2j13A 247 59.18 c.6.2.3 137934 3b40A 417 60.64 2d13A 227 60.82 c.26.2.1 131121 1zkpA 268 62.27 d.157.1.9 125205 1xw8A 252 62.49 c.6.2.5 116111 4ubpC 570 63.02 b.92.1.1,c.1.9.2 28431,29053 1xfkA 336 64.24 c.42.1.1 115264 1ccwA 137 64.24 c.23.6.1 31238 1hw6A 278 66.41 c.1.7.1 61296 2yw3A 207 67.02 2qw5A 335 68.09 1i60A 278 69.17 c.1.15.4 71118 2vhhA 405 71.15 1gs5A 258 72.48 c.73.1.2 70395 2g0wA 296 72.72 c.1.15.4 134503 1v77A 212 73.20 c.6.3.2 108402 1vd6A 224 74.40 c.1.18.3 119991 1z85A 234 75.05 1vhcA 224 75.40 c.1.10.1 100661 1nhsA 447 76.88 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2e5vA 472 77.29 1vhyA 257 78.46 b.122.1.2,c.116.1.5 100714,100715 1ionA 243 79.13 c.37.1.10 62633 1wruA 379 79.37 1v6tA 255 79.53 c.6.2.5 113550 2ohwA 133 81.12 2jg1A 330 81.57 1gq6A 313 82.84 c.42.1.1 70341 1vimA 200 86.18 c.80.1.3 100758 1pdr 99 87.00 2cc0A 195 88.53 c.6.2.3 130209 1rvgA 305 88.65 c.1.10.2 97920