# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 5.76e-14 c.6.3.1 84847 2anuA 255 1.08e-13 c.6.3.1 127058 2yxoA 267 3.69e-12 2hnhA 910 1.95e-07 2nzlA 392 1.374 2rduA 387 1.939 1w1iE 357 4.632 c.1.9.1 109051 1fkx 349 4.820 2du2A 374 4.903 1vflA 356 5.102 c.1.9.1 120041 2pgfA 371 7.126 1a4mA 349 9.612 c.1.9.1 29014 1ltdA 506 11.68 c.1.4.1,d.120.1.1 28618,41086 2amxA 376 12.97 c.1.9.1 127024 2nliA 368 21.40 1qwgA 251 23.20 c.1.27.1 96473 2ggtA 164 23.34 c.47.1.10 135156 1acmA 310 24.04 c.78.1.1,c.78.1.1 35180,35181 1u1iA 392 24.79 c.2.1.3,d.81.1.3 107582,107583 1xhcA 367 25.55 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2pz0A 252 25.81 1m5wA 243 32.92 c.1.24.1 84836 3ciwA 348 33.91 8atcA 310 36.89 c.78.1.1,c.78.1.1 35132,35133 1ng4A 390 37.42 c.3.1.2,d.16.1.3 85666,85667 3b40A 417 38.12 2rghA 571 38.78 1ny1A 240 38.79 c.6.2.3 86395 3b79A 129 39.16 2eplX 627 39.96 3csuA 310 40.47 c.78.1.1,c.78.1.1 35094,35095 1ho1A 242 45.91 c.1.24.1 61097 1eceA 358 45.96 c.1.8.3 28813 2ipiA 521 46.32 1ceoA 343 47.51 c.1.8.3 28808 1ionA 243 47.84 c.37.1.10 62633 2i5gA 325 47.94 3cgvA 397 48.02 1ekxA 311 49.81 c.78.1.1,c.78.1.1 35088,35089 1ml4A 308 50.95 c.78.1.1,c.78.1.1 79255,79256 1nf3C 128 51.90 b.36.1.1 85596 1gkpA 458 52.06 b.92.1.3,c.1.9.6 70231,70232 1ad4A 266 57.36 c.1.21.1 29670 3grsA 478 58.21 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2gagB 405 58.49 2e7yA 280 59.35 1i60A 278 59.51 c.1.15.4 71118 1wa3A 205 60.10 c.1.10.1 120802 1wbhA 214 60.61 c.1.10.1 120845 2b7kA 200 63.24 c.47.1.10 128042 2e5vA 472 63.96 2nlyA 245 64.06 c.6.2.7 138364 1e19A 314 64.12 c.73.1.1 34967 2obnA 349 64.85 1g0cA 364 65.44 c.1.8.3 60165 2qulA 290 66.41 1zk7A 467 68.06 1erzA 303 68.54 d.160.1.2 59498 1ojxA 263 69.52 c.1.10.1 93164 1fl2A 310 69.58 c.3.1.5,c.3.1.5 59869,59870 2d13A 227 71.01 c.26.2.1 131121 2dfaA 250 71.60 c.6.2.5 131469 1goxA 369 71.80 c.1.4.1 28607 1vhcA 224 73.21 c.1.10.1 100661 1qauA 112 73.28 b.36.1.1 24779 1yrrA 382 73.44 b.92.1.5,c.1.9.10 123935,123936 1v77A 212 74.62 c.6.3.2 108402 2a0mA 316 74.94 c.42.1.1 125960 1xfkA 336 75.13 c.42.1.1 115264 2ohwA 133 76.62 2h9aB 310 77.13 1vd6A 224 77.51 c.1.18.3 119991 2j13A 247 78.80 c.6.2.3 137934 1vlwA 217 78.90 c.1.10.1 108868 2yw3A 207 78.91 1x9iA 302 80.76 c.80.1.1 114997 2d3aA 356 80.94 1lssA 140 81.45 c.2.1.9 74246 2o55A 258 83.78 1ccwA 137 85.64 c.23.6.1 31238 1q1rA 431 85.68 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1h5vA 304 87.35 c.1.8.3 70898 1zkpA 268 88.23 d.157.1.9 125205