# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2anuA 255 6.45e-14 c.6.3.1 127058 1m65A 245 3.10e-13 c.6.3.1 84847 2yxoA 267 1.44e-11 2hnhA 910 1.01e-06 1qwgA 251 3.057 c.1.27.1 96473 2nzlA 392 3.693 1w1iE 357 6.350 c.1.9.1 109051 1fkx 349 6.752 1v77A 212 6.782 c.6.3.2 108402 2tpsA 227 7.495 c.1.3.1 28591 1a4mA 349 9.050 c.1.9.1 29014 1i60A 278 11.68 c.1.15.4 71118 2qulA 290 11.69 2rduA 387 11.96 1gkpA 458 13.31 b.92.1.3,c.1.9.6 70231,70232 1b9zA 516 14.65 b.3.1.1,c.1.8.1 22528,28798 3be7A 408 15.21 1erzA 303 15.23 d.160.1.2 59498 2du2A 374 17.82 2pgfA 371 19.35 1o12A 376 21.17 b.92.1.5,c.1.9.10 80758,80759 2vhhA 405 21.31 1emsA 440 28.63 d.13.1.1,d.160.1.1 37520,42086 2v9dA 343 29.98 1h5yA 253 30.02 c.1.2.1 65638 1ojxA 263 30.61 c.1.10.1 93164 1npdA 288 31.82 c.2.1.7,c.58.1.5 80681,80682 2uxyA 341 31.90 1uf5A 303 32.62 d.160.1.2 107808 1h1nA 305 34.59 c.1.8.3 70855 1h5vA 304 34.69 c.1.8.3 70898 1ho1A 242 34.72 c.1.24.1 61097 1ad4A 266 34.76 c.1.21.1 29670 2j13A 247 38.05 c.6.2.3 137934 1itcA 516 38.28 b.3.1.1,c.1.8.1 83705,83706 1ltdA 506 38.39 c.1.4.1,d.120.1.1 28618,41086 1wbhA 214 38.76 c.1.10.1 120845 2i5gA 325 39.05 1eceA 358 41.96 c.1.8.3 28813 3b40A 417 42.02 1ceoA 343 42.67 c.1.8.3 28808 1kyhA 276 43.29 c.72.1.4 73222 1m5wA 243 44.95 c.1.24.1 84836 2hy1A 280 45.73 2yvtA 260 45.90 7a3hA 303 45.99 c.1.8.3 28817 2pz0A 252 46.07 2ay1A 394 46.49 c.67.1.1 34357 2fywA 267 48.06 c.135.1.1 134408 2obnA 349 48.13 1yrrA 382 49.86 b.92.1.5,c.1.9.10 123935,123936 1vflA 356 50.19 c.1.9.1 120041 1ujpA 271 52.78 c.1.2.4 99462 2amxA 376 53.29 c.1.9.1 127024 1nmoA 247 55.79 c.135.1.1 91980 1vk4A 298 56.91 c.72.1.1 100850 1xi3A 215 57.90 c.1.3.1 109601 2e7yA 280 58.17 1kcxA 518 59.31 b.92.1.3,c.1.9.6 90953,90954 2ftwA 521 59.78 b.92.1.3,c.1.9.6 134083,134084 1gkrA 458 60.24 b.92.1.3,c.1.9.6 70251,70252 1ars 396 61.13 1vjtA 483 62.56 c.2.1.5,d.162.1.2 100833,100834 1tyyA 339 64.20 c.72.1.1 112850 1ariA 396 64.79 c.67.1.1 34331 2yw3A 207 66.74 2ffiA 288 67.30 c.1.9.15 133385 2e11A 266 67.51 4ubpC 570 67.77 b.92.1.1,c.1.9.2 28431,29053 2p10A 286 69.75 1qnrA 344 70.52 c.1.8.3 28834 2nliA 368 71.75 2qv5A 261 73.05 1u9iA 519 74.26 c.37.1.11,c.37.1.11 119637,119638 1qopA 268 74.39 c.1.2.4 28570 2ggtA 164 74.52 c.47.1.10 135156 1j31A 262 75.25 d.160.1.2 90808 1ccwA 137 76.16 c.23.6.1 31238 2dfaA 250 76.86 c.6.2.5 131469 1p1mA 406 78.64 b.92.1.4,c.1.9.9 87696,87697 1tx2A 297 78.75 c.1.21.1 107420 1cz1A 394 80.37 c.1.8.3 28839 1g67A 225 80.53 c.1.3.1 60311 1qnoA 344 81.83 c.1.8.3 28838 2nlyA 245 82.07 c.6.2.7 138364 3cjpA 272 85.12 1o1zA 234 87.16 c.1.18.3 86555 2ihtA 573 87.33 1vhcA 224 88.06 c.1.10.1 100661 1dusA 194 88.54 c.66.1.4 34182 3c61A 314 89.30 1hw6A 278 89.54 c.1.7.1 61296