# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2anuA	255	3.21e-12	c.6.3.1	127058
1m65A	245	7.29e-12	c.6.3.1	84847
2yxoA	267	2.14e-10		
2hnhA	910	2.80e-06		
2nzlA	392	3.136		
1w1iE	357	4.648	c.1.9.1	109051
1fkx	349	5.016		
1v77A	212	7.568	c.6.3.2	108402
1a4mA	349	7.760	c.1.9.1	29014
1i60A	278	11.42	c.1.15.4	71118
1ltdA	506	11.68	c.1.4.1,d.120.1.1	28618,41086
2pgfA	371	11.73		
2qulA	290	14.21		
2rduA	387	15.19		
3b40A	417	16.69		
2du2A	374	19.75		
1vflA	356	21.15	c.1.9.1	120041
2tpsA	227	21.98	c.1.3.1	28591
2oodA	475	22.78		
1ojxA	263	23.17	c.1.10.1	93164
1tyyA	339	23.27	c.72.1.1	112850
2amxA	376	23.93	c.1.9.1	127024
2pz0A	252	26.89		
1o12A	376	28.46	b.92.1.5,c.1.9.10	80758,80759
1erzA	303	28.50	d.160.1.2	59498
1gkpA	458	30.30	b.92.1.3,c.1.9.6	70231,70232
2nlyA	245	32.05	c.6.2.7	138364
1g0cA	364	32.93	c.1.8.3	60165
3be7A	408	34.03		
7a3hA	303	34.23	c.1.8.3	28817
1npdA	288	35.09	c.2.1.7,c.58.1.5	80681,80682
1b9zA	516	36.25	b.3.1.1,c.1.8.1	22528,28798
2i5gA	325	38.14		
2ggtA	164	38.62	c.47.1.10	135156
1m5wA	243	40.01	c.1.24.1	84836
1qnoA	344	40.80	c.1.8.3	28838
1emsA	440	42.22	d.13.1.1,d.160.1.1	37520,42086
1h5yA	253	42.44	c.1.2.1	65638
1nmoA	247	45.24	c.135.1.1	91980
2uxyA	341	49.05		
1vk4A	298	49.44	c.72.1.1	100850
1o1zA	234	49.48	c.1.18.3	86555
1ho1A	242	49.64	c.1.24.1	61097
1uf5A	303	52.72	d.160.1.2	107808
2ragA	417	53.93		
1ceoA	343	54.34	c.1.8.3	28808
1h5vA	304	56.98	c.1.8.3	70898
1j6pA	418	58.12	b.92.1.4,c.1.9.9	77089,77090
1pymA	295	58.31	c.1.12.7	29308
2qv5A	261	58.39		
1qwgA	251	60.07	c.1.27.1	96473
2vqeC	239	60.28		
1h1nA	305	60.30	c.1.8.3	70855
1f89A	291	61.16	d.160.1.1	64988
2o55A	258	64.15		
1k6wA	426	64.19	b.92.1.2,c.1.9.5	68236,68237
1kcxA	518	64.62	b.92.1.3,c.1.9.6	90953,90954
2yv1A	294	65.41		
1fjgC	239	67.77	d.52.3.1,d.53.1.1	38831,38839
2v9dA	343	68.67		
1geqA	248	69.64	c.1.2.4	28589
1pnsC	206	69.81	i.1.1.1	88170
1eceA	358	70.16	c.1.8.3	28813
2e7yA	280	70.69		
1ad4A	266	71.22	c.1.21.1	29670
2hqbA	296	73.81		
1tz9A	367	74.02	c.1.15.6	107466
1kyhA	276	75.14	c.72.1.4	73222
2iw0A	254	75.29	c.6.2.3	137737
2ftwA	521	75.64	b.92.1.3,c.1.9.6	134083,134084
1s2wA	295	78.46	c.1.12.7	98407
1rd5A	262	78.51	c.1.2.4	111772
1xw8A	252	79.34	c.6.2.5	116111
2g0wA	296	80.87	c.1.15.4	134503
2ihtA	573	81.70		
1ujpA	271	81.78	c.1.2.4	99462
1p1mA	406	82.75	b.92.1.4,c.1.9.9	87696,87697
1wbhA	214	83.35	c.1.10.1	120845
1o5kA	306	86.45	c.1.10.1	92504
1gdeA	389	89.07	c.67.1.1	60456