# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2anuA 255 2.39e-08 c.6.3.1 127058 1m65A 245 2.59e-06 c.6.3.1 84847 2yxoA 267 6.51e-06 2hnhA 910 0.2279 1vliA 385 5.183 b.85.1.1,c.1.10.6 108830,108831 2amxA 376 5.310 c.1.9.1 127024 2pgfA 371 5.361 1xrtA 467 7.505 b.92.1.3,c.1.9.6 122258,122259 1bqcA 302 8.182 c.1.8.3 28831 1erzA 303 9.033 d.160.1.2 59498 2bdqA 224 10.72 2q02A 272 10.74 2zdrA 349 11.08 2osxA 481 11.35 2bneA 241 12.39 c.73.1.3 128824 1yx1A 264 12.91 c.1.15.7 124169 1fkx 349 13.03 1w1iE 357 13.94 c.1.9.1 109051 3ciwA 348 14.03 1rh9A 373 14.08 c.1.8.3 118773 2dr3A 247 14.23 1l7dA 384 14.82 c.2.1.4,c.23.12.2 77774,77775 1m5wA 243 15.16 c.1.24.1 84836 2p0oA 372 15.24 1n7kA 234 15.49 c.1.10.1 85374 1vflA 356 16.06 c.1.9.1 120041 2puzA 419 16.24 1uf5A 303 16.82 d.160.1.2 107808 2q09A 416 16.95 1gox 370 17.06 2du2A 374 17.42 1goxA 369 18.77 c.1.4.1 28607 1hl9A 449 19.86 b.71.1.3,c.1.8.11 90650,90651 1ho1A 242 19.94 c.1.24.1 61097 2cw6A 298 19.98 1kfcA 268 20.46 c.1.2.4 77371 2gokA 429 20.65 1qo2A 241 21.45 c.1.2.1 28533 2a1fA 247 22.13 c.73.1.3 125991 2nzlA 392 22.24 1yxyA 234 22.45 c.1.2.5 124203 1vjzA 341 22.61 c.1.8.3 100838 1ceoA 343 23.25 c.1.8.3 28808 2g3fA 421 23.99 1cz1A 394 24.64 c.1.8.3 28839 1qopA 268 24.70 c.1.2.4 28570 2rduA 387 25.81 2c0hA 353 26.16 c.1.8.3 129594 1dxy 333 26.50 1dxyA 333 26.65 c.2.1.4,c.23.12.1 30094,31354 1y0eA 223 27.51 c.1.2.5 116297 1p4cA 380 27.66 c.1.4.1 94100 2vojA 371 28.16 2nxfA 322 28.74 1xuuA 349 28.83 b.85.1.1,c.1.10.6 116067,116068 2pc8A 400 29.08 1vemA 516 30.04 b.3.1.1,c.1.8.1 120021,120022 1a4mA 349 30.05 c.1.9.1 29014 2h8zA 359 30.24 1t71A 281 30.58 d.159.1.9 112283 2z1aA 552 30.78 2i5gA 325 31.42 1b9zA 516 32.12 b.3.1.1,c.1.8.1 22528,28798 1hyuA 521 32.26 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1wkyA 464 32.92 b.18.1.31,c.1.8.3 120992,120993 1ub3A 220 33.35 c.1.10.1 88395 1nvmA 345 33.76 a.5.7.1,c.1.10.5 86249,86250 1xi3A 215 34.66 c.1.3.1 109601 1he2A 206 35.32 c.2.1.2 60966 1vc4A 254 35.91 c.1.2.4 100557 1v0lA 313 36.19 c.1.8.3 108207 2qw5A 335 36.44 1tvnA 293 36.61 c.1.8.3 119360 2z26A 347 36.70 1w8sA 263 36.83 c.1.10.1 120744 1rqbA 539 36.98 a.5.7.2,c.1.10.5 105057,105058 1xyzA 347 37.17 c.1.8.3 28804 1tz9A 367 37.19 c.1.15.6 107466 1ur4A 399 38.81 c.1.8.3 113402 2qulA 290 39.08 1h1nA 305 39.32 c.1.8.3 70855 1gci 269 39.57 2abbA 364 39.77 c.1.4.1 126517 1h1yA 228 41.26 c.1.2.2 76506 1j31A 262 41.84 d.160.1.2 90808 1vbuA 328 42.86 c.1.8.3 119963 1o0yA 260 43.04 c.1.10.1 80756 1ojxA 263 43.41 c.1.10.1 93164 1vl2A 421 43.57 c.26.2.1,d.210.1.1 108708,108709 1egzA 291 45.25 c.1.8.3 28828 3bh0A 315 45.96 1itcA 516 46.94 b.3.1.1,c.1.8.1 83705,83706 2blnA 305 48.02 b.46.1.1,c.65.1.1 128734,128735 1zcoA 262 48.26 2eg6A 347 48.97 1tb3A 352 49.54 c.1.4.1 119205 1xgkA 352 50.96 c.2.1.2 115286 1zjaA 557 51.29 1w0mA 226 51.73 c.1.1.1 109027 2scuA 288 51.75 c.2.1.8,c.23.4.1 30303,31131 1r85A 379 52.33 c.1.8.3 104839 1qwgA 251 52.68 c.1.27.1 96473 7a3hA 303 52.73 c.1.8.3 28817 1k6wA 426 52.84 b.92.1.2,c.1.9.5 68236,68237 2odaA 196 53.31 1vzwA 244 53.42 c.1.2.1 120553 1xyfA 436 53.54 b.42.2.1,c.1.8.3 25577,28909 1j79A 347 53.82 c.1.9.4 62675 2dztA 248 53.89 2vhhA 405 54.95 2o55A 258 54.97 2eq6A 464 55.05 2fliA 220 55.84 c.1.2.2 133714 2cc0A 195 56.21 c.6.2.3 130209 1gw9A 388 56.64 c.1.15.3 70658 1ush 550 56.95 2depA 356 57.09 1ox6A 555 57.22 c.1.2.1,c.23.16.1 87505,87506 1g8mA 593 57.93 c.24.1.3,c.97.1.4 60371,60372 2pr7A 137 59.19 1sznA 417 59.60 b.71.1.1,c.1.8.1 106162,106163 1yixA 265 60.24 c.1.9.12 123371 2v9dA 343 60.66 1uasA 362 60.82 b.71.1.1,c.1.8.1 88388,88389 1ceo 343 61.42 2gzxA 265 61.73 2i2xA 461 62.10 1jr1A 514 62.82 c.1.5.1,d.37.1.1,d.37.1.1 63241,63242,63243 2cbiA 594 63.48 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 2podA 410 64.46 1k6xA 352 64.76 c.2.1.2 68238 1ua7A 422 66.85 b.71.1.1,c.1.8.1 107759,107760 3cjpA 272 67.34 2aamA 309 67.49 c.1.8.15 126489 2nliA 368 68.61 1t2aA 375 69.10 c.2.1.2 99078 1gciA 269 69.38 c.41.1.1 32503 1eceA 358 70.00 c.1.8.3 28813 4xiaA 393 70.55 c.1.15.3 29439 1n82A 331 70.77 c.1.8.3 91703 1uu1A 335 70.99 c.67.1.1 99993 2fprA 176 71.87 c.108.1.19 133919 1k92A 455 74.76 c.26.2.1,d.210.1.1 68325,68326 1g0cA 364 74.84 c.1.8.3 60165 1hp1A 516 76.01 d.114.1.1,d.159.1.2 70976,70977 1m9nA 613 76.32 c.24.1.3,c.97.1.4 78870,78871 1fmtA 314 76.80 b.46.1.1,c.65.1.1 25758,34174 1rd5A 262 77.38 c.1.2.4 111772 2pz0A 252 77.40 2r91A 286 77.60 1mzhA 225 78.19 c.1.10.1 79698 1vhqA 232 79.93 c.23.16.2 100696 2qt3A 403 79.96 1w5nA 337 80.03 2oxnA 340 80.17 1ta3B 303 80.28 c.1.8.3 106732 2o2xA 218 80.52 1thmA 279 82.03 c.41.1.1 32544 1ybdA 239 82.10 c.73.1.3 122884 1ei6A 406 83.39 c.76.1.4 90443 1ktbA 405 83.87 b.71.1.1,c.1.8.1 72960,72961 2tpsA 227 83.95 c.1.3.1 28591 1r30A 369 84.08 c.1.28.1 96895 2d1zA 436 84.08 1h5yA 253 84.42 c.1.2.1 65638 2choA 716 84.49 a.246.1.1,c.1.8.10,d.92.2.3 130479,130480,130481 1kwgA 645 84.74 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1u9iA 519 85.22 c.37.1.11,c.37.1.11 119637,119638 1j4aA 333 85.30 c.2.1.4,c.23.12.1 71502,71503 3co4A 312 85.86 1rvgA 305 86.60 c.1.10.2 97920 1v77A 212 86.62 c.6.3.2 108402 1vkfA 188 86.85 c.1.29.1 108656 1yacA 208 86.90 c.33.1.3 31757 3b4uA 294 87.36 2yv1A 294 87.49 1d9eA 284 87.74 c.1.10.4 29195 1h5vA 304 87.89 c.1.8.3 70898 1ra0A 430 88.39 b.92.1.2,c.1.9.5 111756,111757 2ew8A 249 88.91 c.2.1.2 132447 2cksA 306 89.05 1w32A 348 89.18 c.1.8.3 114120 1xwyA 264 89.22 c.1.9.12 122411