Best Alignments for T0407

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2hnhA	1.1441e-20	2hnhA/T0407-2hnhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1m65A	3.6583e-16	1m65A/T0407-1m65A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2yxoA	1.3916e-15	2yxoA/T0407-2yxoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2anuA	3.1039e-15	2anuA/T0407-2anuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
1v77A	2.6692e-06	1v77A/T0407-1v77A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.2
2gzxA	2.6145e-01	2gzxA/T0407-2gzxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qahA	2.7188e-01	2qahA/T0407-2qahA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j6oA	2.9104e-01	1j6oA/T0407-1j6oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1zzmA	4.5037e-01	1zzmA/T0407-1zzmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
3c86A	5.9221e-01	3c86A/T0407-3c86A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yixA	6.3156e-01	1yixA/T0407-1yixA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
2ffiA	8.7384e-01	2ffiA/T0407-2ffiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.15
2icsA	8.8296e-01	2icsA/T0407-2icsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.92.1.8 c.1.9.14
1xwyA	9.8748e-01	1xwyA/T0407-1xwyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1vflA	9.8751e-01	1vflA/T0407-1vflA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1
1bf6A	1.3230e+00	1bf6A/T0407-1bf6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.3
2pgfA	1.4802e+00	2pgfA/T0407-2pgfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2vc7A	1.5455e+00	2vc7A/T0407-2vc7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gokA	1.8694e+00	2gokA/T0407-2gokA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ob3A	2.0147e+00	2ob3A/T0407-2ob3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001