# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hnhA 910 2.24e-13 1m65A 245 1.83e-11 c.6.3.1 84847 2yxoA 267 9.40e-11 2anuA 255 1.38e-10 c.6.3.1 127058 1v77A 212 4.68e-05 c.6.3.2 108402 2qahA 303 0.4759 1j6oA 268 0.8333 c.1.9.12 77088 2gzxA 265 0.9781 2pgfA 371 1.752 2ffiA 288 2.042 c.1.9.15 133385 1yixA 265 2.367 c.1.9.12 123371 1zzmA 259 2.485 c.1.9.12 125911 1vflA 356 2.513 c.1.9.1 120041 2icsA 379 2.635 b.92.1.8,c.1.9.14 137241,137242 2gokA 429 2.807 1o12A 376 3.212 b.92.1.5,c.1.9.10 80758,80759 1xwyA 264 4.145 c.1.9.12 122411 3c86A 328 4.346 1bf6A 291 6.097 c.1.9.3 29065 2q09A 416 6.403 2pg3A 232 6.633 2ob3A 330 6.725 2amxA 376 7.429 c.1.9.1 127024 1yx1A 264 7.805 c.1.15.7 124169 2fb2A 340 7.967 2z00A 426 8.034 3be7A 408 8.263 1tv8A 340 8.664 c.1.28.3 107352 2q02A 272 8.818 1xrtA 467 9.285 b.92.1.3,c.1.9.6 122258,122259 2qpxA 376 9.99 1cb0A 283 11.63 c.56.2.1 33790 1qtwA 285 11.78 c.1.15.1 29392 1yw1A 442 12.01 c.1.16.4 124130 1i0dA 332 12.24 c.1.9.3 61487 2g3fA 421 12.31 1gkrA 458 12.73 b.92.1.3,c.1.9.6 70251,70252 1vc4A 254 13.32 c.1.2.4 100557 2qs8A 418 14.11 1ybqB 390 14.89 1a0cA 438 15.99 c.1.15.3 29529 1b8oA 284 16.45 c.56.2.1 33762 2vc7A 314 17.39 3ciwA 348 17.90 1lqaA 346 17.96 c.1.7.1 84674 1k77A 260 18.16 c.1.15.5 72096 1o0yA 260 18.67 c.1.10.1 80756 2f6kA 307 20.47 c.1.9.15 133047 2hk0A 309 20.49 2puzA 419 22.82 1i60A 278 24.03 c.1.15.4 71118 2gwnA 452 24.22 1h5yA 253 24.51 c.1.2.1 65638 3bofA 566 24.80 2a0nA 265 25.39 c.1.2.1 125961 1ra0A 430 26.07 b.92.1.2,c.1.9.5 111756,111757 1j96A 323 26.34 c.1.7.1 71616 1f6yA 262 27.53 c.1.21.2 29673 2qw5A 335 27.65 1ny1A 240 28.14 c.6.2.3 86395 3canA 182 29.70 1frb 315 30.21 1muwA 386 32.72 c.1.15.3 79495 1yxyA 234 33.53 c.1.2.5 124203 2a8yA 270 33.97 2pajA 492 34.99 1q7zA 566 35.12 c.1.21.2,c.1.26.1 96090,96091 2b81A 323 36.76 2og9A 393 38.50 2hqbA 296 38.76 2egzA 219 38.92 1kkoA 413 39.70 c.1.11.2,d.54.1.1 68675,68676 1pyfA 312 40.79 c.1.7.1 95334 1yrrA 382 41.71 b.92.1.5,c.1.9.10 123935,123936 2gekA 406 41.94 1p1mA 406 42.01 b.92.1.4,c.1.9.9 87696,87697 1g67A 225 42.74 c.1.3.1 60311 1hw6A 278 44.55 c.1.7.1 61296 1n7kA 234 44.68 c.1.10.1 85374 3cgvA 397 45.16 2nw0A 189 45.95 2qjjA 402 47.09 1z82A 335 47.27 1gg4A 452 47.74 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1kqpA 271 48.11 c.26.2.1 72883 3b9oA 440 50.79 1fxxA 482 51.26 c.55.3.5 33726 2qulA 290 53.12 2qt3A 403 54.16 2nliA 368 54.27 1f07A 321 54.74 c.1.16.3 59560 1rhcA 330 55.58 c.1.16.3 97468 3beoA 375 55.92 1a0dA 440 55.93 c.1.15.3 29533 2pgwA 384 56.30 2h3hA 313 56.38 2r8cA 426 56.45 1zuaX 317 58.61 2vesA 299 59.44 1e8cA 498 59.69 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 3c8nA 356 59.80 2r8wA 332 59.82 1xhcA 367 60.01 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2nqlA 388 60.22 1us0A 316 60.25 c.1.7.1 99850 1thfD 253 60.31 c.1.2.1 28535 1vzwA 244 60.47 c.1.2.1 120553 1v4vA 376 60.99 c.87.1.3 100313 2nlyA 245 61.36 c.6.2.7 138364 2rfgA 297 62.02 1je0A 236 63.66 c.56.2.1 66581 1a53 247 64.17 1ivnA 190 65.04 c.23.10.5 83719 1qopA 268 66.33 c.1.2.4 28570 1gkpA 458 67.16 b.92.1.3,c.1.9.6 70231,70232 2pa6A 427 67.50 1tvlA 454 69.50 c.1.16.4 107366 2imrA 420 70.31 2dztA 248 71.13 2ps2A 371 72.35 2bneA 241 72.92 c.73.1.3 128824 2ac7A 235 73.57 c.56.2.1 126543 2j6vA 301 75.99 2e7fA 262 76.57 1s1pA 331 76.73 c.1.7.1 98350 2zbwA 335 77.68 1kczA 413 79.84 c.1.11.2,d.54.1.1 68451,68452 1ezwA 349 81.07 c.1.16.3 29558 1nsjA 205 81.36 c.1.2.4 28560 1w8sA 263 81.52 c.1.10.1 120744 1zgdA 312 81.85 2p6pA 384 82.24 1nnsA 326 82.90 c.88.1.1 85910 2v3gA 283 83.20 1mi3A 322 84.35 c.1.7.1 91274 2zadA 345 84.39 2ftwA 521 84.84 b.92.1.3,c.1.9.6 134083,134084 1vhwA 253 85.20 c.56.2.1 100706 2r8rA 228 85.31 2gwgA 350 85.43 c.1.9.15 135805 3ct2A 382 86.15 2opjA 327 86.75 2hmcA 344 87.88 1ybdA 239 88.10 c.73.1.3 122884 2q0sA 216 89.08 1kbjA 412 89.39 c.1.4.1 72280 1onwA 390 89.51 b.92.1.7,c.1.9.13 87172,87173 1rd5A 262 89.84 c.1.2.4 111772